Gene detail

Gene detail information of Glyur000242s00021057

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61110.1	1.00E-44	ribosomal protein S27
NR	XP_006292074.1	3.29E-56	hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
COG	YP_001737963.1	1.00E-08	30S ribosomal protein S27E [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q9M2F1\|RS272_ARATH	2.00E-57	40S ribosomal protein S27-2
trEMBL	tr\|R0FQY1\|R0FQY1_9BRAS	1.00E-56	40S ribosomal protein S27 {ECO:0000256\|RuleBase:RU000671} (Fragment)

Sequence

Transcript Sequence

>Glyur000242s00021057.1
CCCCTTGCAGTTCCTTCTCCTTTCTCGCACTGTGCGTTTCTCTCATCTGCGGCTGCAAAACTTAGGGTTAGGGTTTTTCAGAGGTTTCCTCAAAGTGCTTCAAATTTTTCTCCCAATATGGTTCTTCAGAATGATATTGATTTGCTAAATCCCCCAGCTGAACTTGAGAACAGAAAGCACAAGCTNAAGAGACTTGTTCAGTCACCAAACTCTTTCTTCATGGATGTTAAATGTCAGGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAAACAGTTGTAGTTTGTGGCAACTGCCAGACTGTTTTGTGCCAACCGACTGGCGGTAAGGCGAGGTTAACCGAAGGTTGTTCATTCAGGAAGAAGGGAGACTGAACGGTGCGACGGCTTTTCTTTCCTTTGATTGAAGAGTTTCTGTTGTTAGGTTCTAAGATGGAATCAGTTTTAGTTATTATGATATATTAATTTTGTTAAAATTGTAAGACATTGTCTCCTGACCTTCCCAGGATTTAATGTTATCTCCCATTCTTGAATTTCTCTCTAGTGAAGTGGATATGGTTTTGTTGGATATTTAGTTTTTAAATACATGTTATTGAGCCCTTGCTTGCATCCGGTTGTTCGTATGATGTGCACGTGTTAATGTACATGTGAATTATGATTCATGAGAAGTACATTCCACNGAATGTACCATTTTACTTCATTTCATTCTCTAAGTTCTCTGTTTTGTAGTTGGAATATTTTAGTGATGACATGGTCAGGCAGCAATTATAGTTGGAAATGGTTGTCTGTTTTCCATGGGAATTTTCCAATTTGTTATGTAGGTAATTTGTCTATTTGTCTATTGATTAGTACACCACAAAAATGTGTATTGATTCTATTATAAAGCATATAAGGTTTTTTTTGGATGAGTAGTAGTAATTAGTATGTTATGTTAGTGAGATGATTTGAATCCTTGACCTCCTTATCACTCCAACACTTAAGTCTCTCCCACAACCACCAAACCTCCTTATCACTCCACTGAAGCATATAAGTAGTCTCTGAATATTAGTTTTTGTTTATAAAGGCAGTTCATTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00242	84247	85763	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000242s00021057.1	PF01667.12	Ribosomal_S27e	30	84	3.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.505
SRR1783600	control	26.024
SRR1783602	moderate drought stress	18.142
SRR1811619	moderate drought stress	18.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	84.285
DRR006520	Root Summer glycyrrhizin high producing strain	82.708
DRR006521	Root Winter glycyrrhizin high producing strain	58.434
DRR006522	Root Winter glycyrrhizin high producing strain	55.914
DRR006523	Root Summer glycyrrhizin low producing strain	47.272
DRR006524	Root Summer glycyrrhizin low producing strain	46.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.851
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.929
SRR2868004	Drought Stress (root)	74.550
SRR2967015	Control (root)	70.058

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.717
SRR9715740	Leaf	53.039
SRR9715741	Leaf	64.974
SRR9715739	Root	131.550
SRR9715742	Root	126.662
SRR9715743	Root	130.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.077
SRR8749028	MeJA induced 9h	23.365
SRR8749029	MeJA induced 9h	60.743
SRR8749030	Uninduced	8.800
SRR8749031	Uninduced	10.025
SRR8749032	Uninduced	20.473

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	133.970
SRR8400027	Control - Root	115.537