Gene detail

Gene detail information of Glyur000242s00021044

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13750.1	3.00E-137	zinc induced facilitator-like 1
NR	XP_004502380.1	0	PREDICTED: protein ZINC INDUCED FACILITATOR 1-like [Cicer arietinum]
COG	YP_007318275.1	4.00E-15	arabinose efflux permease family protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q94BZ1\|ZIFL1_ARATH	2.00E-180	Protein ZINC INDUCED FACILITATOR-LIKE 1
trEMBL	tr\|G7J342\|G7J342_MEDTR	0	Zinc induced facilitator-like protein {ECO:0000313\|EMBL:AES72135.2}

Sequence

Transcript Sequence

>Glyur000242s00021044.1
ATGGAAGAGGAGAATTCAGGACAACCATTGTTGAAGAAACCGTATTATGAGAACTGCCCTGGTTGTAAGGTGGATCGAGACAAAGAGCTGAAAACAGATGTTTCCATTCTTAACCTTTCTTATATATGGATGGCGATATTATGTGGCACATTGCCTGTAGCTTCACTCTTTCCATTCGTTTATTTCATGGTAAAGGATTTTAATATTGCTGAGAGAGAGGAAGATATTAGTGCCTATGCTGGTTATGTGGGATCTGCATTCATGCTCGGCAGAGCTTTGACATCTATATTGTGGGGTATGATTTCCGATCGCTATGGTAGAAAACCTGTTATAATCATAGGGGTTATCACAGTTGTCATTTTCAATACGCTATTCGGTCTTAGCACAAATCTTTGGATGGCTATCAGCATGAGATTTCTTCTTGGAAGTTTAAATGGTTTGATTGGACCTGTAAAGGCTTATGCAACTGAAATTTTTACAGAAGAGAAGCAAGCTCTAGGACTCTCAACTGTTGTTGCAGCTTGGGGAGTAGGTTTAGTCATTGGTCCAGCATTGGGAGGTTATTTGGCTCAGCCAGTATTGAAATACCCACATCTATTTCCAAAGGATTCCTTTTGGGATAAGTTTCCCTATTTCTTGCCTTGCTTTATAATATCAGCTTTTGCATTTTCAGTAGCAATTGCCTGCATTTGGTTACCGGAGACACTTCACTACCACAATGGAACCAAAGAATCCGTTGACAATGTTGAAGCTTTAGAAATTGGAAGCAGTGGGGCTGAGAAAGACAAGATGGTCCAAAAAGATGAAAACATCTTCCTAAACTGGCCCTTAATGTCATCTGTCATTGTTTTCTCATTATGGGCTGTTAGTCCTCGATGGTTGGGCGGTTTGAACTTTACTACTAATGATGTTGGTAATGTTCTTGCAATATCAGGTATTGCTATTATAATCTACCAGGTTACCCTGTACCCATCTGTGCAAAAAGCTTGTGGACCTGTTAACCTTGCTCGCATCACGGGGGTACTATCCATACCTCTCTTGCAAAGTTACCCCTTCATGACACTGTTGTCTGGCTCCACACTGTACCTTGTGATAAGTATTGCTTCCATTCTGAAGTTTGTCATGTCTGAGACAATTGCAACTGGTTTATTCCTTCTGCAAAATAGAGCTGTGGAACAACATCAAAGGGGGGCAGCTAATGGCATTGCAATGACTGCTATGTCAGCATTCAAAACAATTGGTCCTGCTGGAGGCGGTGCAATATTAGCATGGTCACAAAAGCGAATAAACGCTTCTTTCCTCCCTGGCACCCATATGGTCTTCCTTGTCCTGAATGTTGTTGAAGGAATTGGAGTGCTATTGATGTTCAAACCATTCTTGGGTGTAAAGAAGAAAACACCAATGGAGCAGTTACACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00242	14176	20451	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000242s00021044.1	PF07690.11	MFS_1	42	415	5.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.002
SRR1783600	control	4.147
SRR1783602	moderate drought stress	2.928
SRR1811619	moderate drought stress	2.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.882
DRR006520	Root Summer glycyrrhizin high producing strain	6.816
DRR006521	Root Winter glycyrrhizin high producing strain	3.209
DRR006522	Root Winter glycyrrhizin high producing strain	2.999
DRR006523	Root Summer glycyrrhizin low producing strain	5.034
DRR006524	Root Summer glycyrrhizin low producing strain	4.706
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.196
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.172

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.207
SRR2868004	Drought Stress (root)	1.812
SRR2967015	Control (root)	3.759

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.277
SRR9715740	Leaf	0.614
SRR9715741	Leaf	0.780
SRR9715739	Root	1.765
SRR9715742	Root	2.794
SRR9715743	Root	1.890

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.426
SRR8749028	MeJA induced 9h	1.283
SRR8749029	MeJA induced 9h	0.320
SRR8749030	Uninduced	0.642
SRR8749031	Uninduced	0.574
SRR8749032	Uninduced	0.333

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.956
SRR8400027	Control - Root	5.426