Gene detail

Gene detail information of Glyur000241s00022768

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23490.1	6.00E-64	cyanase
NR	KHN10060.1	1.70E-106	Cyanate hydratase [Glycine soja]
COG	YP_004625890.1	1.00E-26	cyanate lyase [Thermodesulfatator indicus DSM 15286]
Swissprot	tr\|C6SXE1\|CYNS_SOYBN	6.00E-107	Cyanate hydratase {ECO:0000255\|HAMAP-Rule:MF_03139}
trEMBL	tr\|I1L7G1\|I1L7G1_SOYBN	6.00E-107	Cyanate hydratase {ECO:0000256\|HAMAP-Rule:MF_03139}

Sequence

Transcript Sequence

>Glyur000241s00022768.1
TAGCGAAATCATAATGGCATACGATTGTCTAAGAATCATTTTTATGAATATAATAATATTGTGATAGGATAAGGCCTTTATATTGGGCTGTAGTTTCCAGAACATTCACAACAATCTCAATTTCAGTGGTACAATACAATCTCATTCATTCAATCACAATTCACATGCCCGAAGCCGAAGAATGGAGCAGAACAAAGGGAGCATAGTGACACGACTCCAAGGCGTGAAGCACAAGAGTGGCAAGTCCTACAATCAGTTAGCAGAGGAAACAGGACTCACCAACGTCTATGTTGCCCAGCTTCTCAGGAGACAAGCTCAGCTCAAACCCGACACTGCCCCTATACTCCGGGCAGCGCTGCCCGANCTGCCCGATGAACTCGTGCTTGAGATGATGAGACCCCCTTTGAGGTCTTATGACCCTAATCTCATCCAAGACCCCACTGTCTACAGGTTGAATGAAGCTGTTATGCATTTTGGGGAGAGCATCAAAGAAATAATCAATGAGGAGTTTGGTGATGGGATCATGTCAGCAATAGATTTCTACTGCTCCGTTGACAAAGTTGAAGGAGTAGATGGGAAGGATCGCGTGGTAGTGACATTCGATGGGAAATATTTGCCGCATTCGGAGCAGAAATCAGAGCATATGGTTTCAAGAACAAGGCCACTGGGAAAACAGTGAGTATTATCTTCAGGCCTGGACCAACACCAAACATCTTCAACGCCTGTCTCCCTGCACATGCTTTTACTGTGTCTGTGTCATACTGCTTGCAAGGTGTATTTGATTACTGCTATTTTGTGTTGCCTATTATTATAGAGACATTGGAAGATAATAAAAATAAAACAATAATAATTAAAAGTGGCCAACCATGGCCGCTTATATAATTGTTTATGGCTTTGAAGATATCGTGGTTCTCCCTTAGATTTTATATGTCACATACTTAAGATGGAGAACCTTGCAATGTGTCTGGTTGAGTAAGTCAAATGAACATAATAATATTCATTGTGTGTATCCATATTTATTGTGTACTCGGGCAGTAAAATGTGTGTTAAGTTTACTTTCGGGCAATGGATATTTCCCCCTCTAACATGAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00241	228330	234283	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01725	cynS	EC:4.2.1.104	Nitrogen metabolism	map00910

Gene Ontology

biological_process
GO:0009439 cyanate metabolic process

molecular_function

GO:0003677 DNA binding

GO:0008824 cyanate hydratase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000241s00022768.1	PF02560.9	Cyanate_lyase	78	149	1.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	141.540
SRR1783600	control	143.994
SRR1783602	moderate drought stress	155.904
SRR1811619	moderate drought stress	155.561

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	139.551
DRR006520	Root Summer glycyrrhizin high producing strain	140.251
DRR006521	Root Winter glycyrrhizin high producing strain	99.255
DRR006522	Root Winter glycyrrhizin high producing strain	95.812
DRR006523	Root Summer glycyrrhizin low producing strain	183.469
DRR006524	Root Summer glycyrrhizin low producing strain	183.129
DRR006525	Leaf Summer glycyrrhizin high producing strain	91.784
DRR006526	Leaf Summer glycyrrhizin high producing strain	90.451

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.302
SRR2868004	Drought Stress (root)	72.211
SRR2967015	Control (root)	64.789

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	99.376
SRR9715740	Leaf	137.024
SRR9715741	Leaf	95.107
SRR9715739	Root	39.807
SRR9715742	Root	49.205
SRR9715743	Root	42.428

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.388
SRR8749028	MeJA induced 9h	29.799
SRR8749029	MeJA induced 9h	25.400
SRR8749030	Uninduced	30.743
SRR8749031	Uninduced	14.388
SRR8749032	Uninduced	32.907

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	71.520
SRR8400027	Control - Root	75.100