Gene detail

Gene detail information of Glyur000240s00016389.3

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G31960.2	glucan synthase-like 3
NR	XP_004488455.1	PREDICTED: callose synthase 2-like isoform X3 [Cicer arietinum]
Swissprot	tr\|Q9SL03\|CALS2_ARATH	Callose synthase 2
trEMBL	tr\|V7BX07\|V7BX07_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW21091.1}

Sequence

Transcript Sequence

>Glyur000240s00016389.3
NTCATTCGTGAGCTGTTGCTACCACTTGGCCATGTTATTGCTCCTTCACTTTCTCTGTCTCTCACACTCACACTATCTAATCTAGTAAACCAACCTTAGATAGTGGAGAAAAACTGAAGACAATTCCTTGCTTTCTTGCTAGATTGGTTACTTACTCTTGCAGATACTAGAGTTTCATCCATGGCTTTTTGAGAAGTGATAACAGTTAGAAGTGAAATAGATTGACAATTTGAGGTATCGAGATGTCTTATAGAAGGGGGTCGTCTGATCAGCAACCGCAGAGGCGGATACTGCGGACTCAGACTGCTGGGAATTTAGGGGCAGACCCGATCTTGGACAGTGAAGTGGTGCCTTCCTCACTGGTTGAGATAGCTCCCATTCTACGTGTTGCTAATGAAGTAGAAGCAAGCAATAAAAGAGTTGCTTATCTCTGTCGGTTTTATGCCTTTGAAAAAGCTCACAGACTAGATCCCACATCTAGTGGGCGCGGTGTTCGCCAATTCAAAACTGCTCTTCTTCAACGTCTTGAAAAGGAAAATGACACAACGTTGGAGGGAAGAGCAAAGAGTGATGCTCGTGAAATGCAGAGTTTTTATCGGCATTACTACCAAAAGTATATTCAAGCATTACAGAATGCCGCTGACAAGGACCGTGCCCAGCTCACAAAAGCATATCAAACTGCTGCTGTTTTATTTGAGGTTTTGAGGGCAGTTAATCAAACAGAGGCTGTAGAAGTTGCTGATGAGATCTTGCAAGCTCATCGCGGGGTTGAGGAAAAGAAGCAATTATATGCACCGTATAATATTCTGCCTCTTGATCCAGAGAGCGGGAAAGAGGCTATAATGACATATCCTGAGATTCAAGCTGCTGTCGCTGCACTCCGTACTACCAGGGGCTTGCCATGGCCAAAGGGTCATGGTACTAAAGTAAATGAAGACATTCTGGACTGGCTTCAGCTGATGTTTGGTTTCCAGAAGGGAAATGTGGAAAATCAAAGGGAGCACTTGATTCTTTTGCTTGCAAATGTACATATACGACAAGTTCCAAAACCTGATCAACAACCAAAGTTGGATGATCGTGCTTTAAATGAAGTGATGAAGAAACTCTTTAGAAACTACAAAAAGTGGTGCAGATATTTGGGTCGCAAAAGTAGCCTTTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00240	162457	184781	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003843 1,3-beta-D-glucan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000240s00016389.3	PF04652.11	DUF605	42	159	5.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.852
SRR1783600	control	54.091
SRR1783602	moderate drought stress	61.060
SRR1811619	moderate drought stress	60.451

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.613
DRR006520	Root Summer glycyrrhizin high producing strain	67.997
DRR006521	Root Winter glycyrrhizin high producing strain	48.704
DRR006522	Root Winter glycyrrhizin high producing strain	46.136
DRR006523	Root Summer glycyrrhizin low producing strain	71.136
DRR006524	Root Summer glycyrrhizin low producing strain	70.707
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.280
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.837

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.283
SRR2868004	Drought Stress (root)	111.073
SRR2967015	Control (root)	128.256

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.459
SRR9715740	Leaf	66.723
SRR9715741	Leaf	62.546
SRR9715739	Root	13.195
SRR9715742	Root	101.212
SRR9715743	Root	86.048

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.094
SRR8749028	MeJA induced 9h	47.557
SRR8749029	MeJA induced 9h	16.384
SRR8749030	Uninduced	13.743
SRR8749031	Uninduced	6.904
SRR8749032	Uninduced	9.639

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	103.542
SRR8400027	Control - Root	125.445