Gene detail

Gene detail information of Glyur000240s00016380

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58730.1	2.00E-112	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)
NR	AFK34491.1	1.49E-158	unknown [Lotus japonicus]
COG	NP_614957.1	2.00E-25	V-type ATP synthase subunit D [Methanopyrus kandleri AV19]
Swissprot	tr\|Q9XGM1\|VATD_ARATH	2.00E-141	V-type proton ATPase subunit D
trEMBL	tr\|I3S2J9\|I3S2J9_LOTJA	6.00E-159	Uncharacterized protein {ECO:0000313\|EMBL:AFK34491.1}

Sequence

Transcript Sequence

>Glyur000240s00016380.1
GACTTCAAACATGGGTGAGCCCCTTCCTCTTCTTTCATCTCCTCCCTCCCATGAGCATTTCCTCTACTCTTCATAATTTTAAAACCGTGGGTCAAGGGCAAAGACAACAAGCTCTCCATTCTTTGTCATCTCCTCTTTCCATCCCTAGTCTCTTGATTCCCTTTTTTTTTTTTTTTTCAAATTTCAATCCCTAACAATCCCTAATCTCTCAATCCCTTTCGATCTCTGACTCTAATCTCTCTCTATCCTTCCGATCGAACGAAGAAGCTGTATGGAACGAAGAAGCTGTAACGAAGAACCCTAGTCCATTGTCTCGTGATTGCGTTGTGTCGAACGAAGAAGCTGTTCCGATTCTCGACCTATCTATTGGAATCAAGCCTTTGTTGAGATTTCTTCGCAACTACAGTAGAGATCTTGTTTGCGTAGAAGAAGAAGATGAAGAAGAAGAAAAGATGTCAGGGCAATCACAGTGTCTGAATGTGGTCCCCACAGTAACAATGCTGGGAGTGATGAAAGCACGTTTGGTTGGAGCGATGAGAGGCCACGCGCTTCTGAAGAAGAAGAGTGACGCGCTCACGGTGCAGTTCAGGCAGATCCTGAAGAAGATCGTTTCCACAAAGGAATCAATGGGTGACATCATGAAGACCTCTTCCTTTGCCTTGACAGAGGCCAAATACGTTGCCGGCGACAACATTAAGCACGTCGTGCTTGAGAATGTCAAGGAAGCTTCGCTCCGCGTCCGTTCTCGCACTGAGAATGTTGCTGGGGTGAAGCTTCCAAAATTTGACTACACCGCGGACGGTGATGCCACGAAGAATGACCTCACCGGATTGGCCAGGGGTGGCCAGCAGGTGCAGCAGTGTCGCGTCGCTTACATCAAGGCGATCGAGGTCCTTGTTGAGCTTGCCTCCCTTCAGACCTCTTTCCTTACCCTTGATGAGGCTATCAAGACCACCAACCGCAGGGTCAACGCTCTCGAGAACGTCGTCAAGCCGCGGCTGGAGAACACCATTAGTTACATCAAGGGAGAGCTGGATGAGCTTGAGAGGGAGGATTTCTTTAGGTTGAAGAAGATTCAGGGATATAAGAAGAGGGAAATTGAGAGGAAGATGCAGGATTCTAGGGATCAGATTGTTGACAAGTTCCCTTTGCGCAAAGGGGTTTCCTTCAATTCCCCACAACTTCTTGTCTGTAGCTGAGAAAGATGAGGATATCATTTTCTAATCATACATATATATCTAGAGAGAGGGGGAGAGGGAGAGAAAAGAGAGAGCTGAGTTCTTGCTCTTTCTTCAAGGGGGTGGCTGGCTGTGTCATAGTGTGTTGTTGCTGCTGCTTCTGCTTCGTCCGTTGGGTGAGACTTGTCTGCTATTTGTTTAGGTGACAGTGTTCTGTAAAATGAATAAAGGGGCTTAATATATGTTTATTTATTTCTGAGGACATAATTTTTTTGTCATGTTCAGAGACATTGAGACAATCATCGCTTCAAATTATGGTTTCTTGTCTGATCTTATGAAAGTTTTAAGTTATTGTTATTAGCCTTTAATTTGTTTTTCTGAATGTATTACATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00240	102728	106199	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000240s00016380.1	PF01813.12	ATP-synt_D	17	209	6.50E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.570
SRR1783600	control	36.596
SRR1783602	moderate drought stress	30.565
SRR1811619	moderate drought stress	31.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.041
DRR006520	Root Summer glycyrrhizin high producing strain	29.692
DRR006521	Root Winter glycyrrhizin high producing strain	18.804
DRR006522	Root Winter glycyrrhizin high producing strain	18.431
DRR006523	Root Summer glycyrrhizin low producing strain	0.525
DRR006524	Root Summer glycyrrhizin low producing strain	0.666
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.790

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.874
SRR2868004	Drought Stress (root)	15.966
SRR2967015	Control (root)	11.125

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.485
SRR9715740	Leaf	38.874
SRR9715741	Leaf	28.685
SRR9715739	Root	44.624
SRR9715742	Root	33.710
SRR9715743	Root	37.832

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.682
SRR8749028	MeJA induced 9h	16.491
SRR8749029	MeJA induced 9h	12.521
SRR8749030	Uninduced	16.877
SRR8749031	Uninduced	5.966
SRR8749032	Uninduced	11.650

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.686
SRR8400027	Control - Root	56.206