Gene detail

Gene detail information of Glyur000240s00016370

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25835.1	1.00E-94	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004488574.1	0	PREDICTED: uncharacterized protein LOC101489676 [Cicer arietinum]
COG	YP_591316.1	3.00E-26	ATPase AAA [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|P54609\|CD48A_ARATH	7.00E-10	Cell division control protein 48 homolog A
trEMBL	tr\|A0A072VJ57\|A0A072VJ57_MEDTR	0	Chaperone BCS1-A-like protein, putative {ECO:0000313\|EMBL:KEH38185.1}

Sequence

Transcript Sequence

>Glyur000240s00016370.1
ATGTGGTCACTGTTAGGGTTACTCACAGTGCTCCAAAACGTGCTTCCATCACAGCTTCTCTCAGTGCTTCACTCTTTATACGAATCCCTTCAGGATTTGCTTTCTCCCTATTCGTACTTCGAGATTCCTGAGTTCAACGGTTACTGCGGGGTGGAACTCAACGACCTCTACCGCCACGTGCACCTCTACCTGAACGCCGCGAACCACTCCCCCGCCGCNGCGTGCCGCCGCGTGACGCTCTCACGCTCCCCGTCGTCGAGCCGAATCTCCTTTGCGGTGGCGCCGAACCACACCGTCCACGACGCATTCAACGGACACCGACTCTCATGGACACACCACGTGGACACCGTGCAGGACTCCCTCGAGGAGAAGCGGAGCTTCACTCTCCGCCTCCCGAAGGGCCAACGCCACGCGCTCCTCCCATCGTACCTCGCCCACGTCACTTCACGCTCTGAGGAGTTCGAGCGCGTCTCACGCGAGCGCAGGCTCTTCACAAATAACACCGGGTCCGGGTCCTTCGAATCGGGGTGGGTATCCGTACCGTTTCGTCACCCTTCCACTTTCGACACCCTAGCTCTAGAGCCCGAGCTCAAAAAGCAGATAAAAAACGACTTAACCGCTTTCGCTTCGGGTAAGGATTTCTACCACCGGGTTGGGCGTGCGTGGAAGCGCGGGTACTTGCTTCACGGTCCTCCCGGGTCGGGTAAATCAAGCCTAATTGCTGCAATGGCGAATTTCCTGTGCTATGACGTGTACGACTTGGAGCTTACGAAGGTTTCGGATAACTCCGAGCTTCGATCCTTATTGATCCAAACGACGAACCGTTCCATTATCGTTATCGAGGACATTGACTGCTCCGTGAATTTGAATTTAACCGCGGACAGGACGGCGAAGAAAGCGGCAGCAGCGAAGTTGTCGTTTAAGTCNAGGAAGGATAACAACAAAACGGCGTCGTCTTTGGGTTGTGAGGAGAGTGGGCGGGTCACGCTTTCGGGGCTACTGAATTTCACTGACGGGTTGTGGTCTTGCTGTGGCGAGGAGAGGCTTGTGGTGTTTACAACGAACCATAGGGACAGTGTTGACCCGGCGCTGGTTCGGTGCGGGCGAATGGACGTGCACGTGAGTCTCGGCACGTGCGGCGTTCACGCGTTCCGCGAGCTGGCGAGGAACTACCTCGGGGTGGAGACTCACGCGATGTTCGAGGCGGTGGAAGGGTGCATCCGTTCGGGTGGGTCCCTCACGCCGGCGCACGTGGGGGAGATTTTGCTGAGGAACCGGGGGGATGCTGACGTGGCTGTGAGGGAGGTGTTGCATGCTATGCAGGCCAGGATGCTCGCTGTAGCCGCTGCGGCGACCGCCGACCAGACGGACAACGAGGATACGGTGGCGGTCGGGGTGAGGTCACCGGAGAGCGTGCTACTCATGGGGTCGCCGGAGAATTGGGACTCGTTGAGCGGCGGGGGGAAGAAGAGGAAGGAGTCGCATGGGTCGAGTAATTGGGACAAGAAGGTCAAGTTTTTTGTGAGGTTGAGGTCGTTGACCAAATCTGACTCTGGGAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00240	40521	42083	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000240s00016370.1	PF14363.1	AAA_assoc	15	115	5.30E-17
Glyur000240s00016370.1	PF00004.24	AAA	227	376	3.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.651
SRR1783600	control	3.632
SRR1783602	moderate drought stress	10.393
SRR1811619	moderate drought stress	10.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.388
DRR006520	Root Summer glycyrrhizin high producing strain	6.311
DRR006521	Root Winter glycyrrhizin high producing strain	1.274
DRR006522	Root Winter glycyrrhizin high producing strain	0.734
DRR006523	Root Summer glycyrrhizin low producing strain	3.253
DRR006524	Root Summer glycyrrhizin low producing strain	3.515
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.888
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.552

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.281
SRR2868004	Drought Stress (root)	10.804
SRR2967015	Control (root)	11.237

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.967
SRR9715740	Leaf	4.673
SRR9715741	Leaf	4.434
SRR9715739	Root	4.350
SRR9715742	Root	6.750
SRR9715743	Root	6.369

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.873
SRR8749028	MeJA induced 9h	7.917
SRR8749029	MeJA induced 9h	3.525
SRR8749030	Uninduced	4.572
SRR8749031	Uninduced	2.951
SRR8749032	Uninduced	3.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.709
SRR8400027	Control - Root	8.849