Gene detail information of Glyur000239s00017904 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12940.1 | 8.00E-163 | nitrate transporter2.5 |
| NR | XP_003531994.1 | 0 | PREDICTED: high affinity nitrate transporter 2.5-like [Glycine max] |
| COG | YP_677931.1 | 4.00E-88 | nitrate/nitrite transporter [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q9LPV5|NRT25_ARATH | 0 | High affinity nitrate transporter 2.5 |
| trEMBL | tr|I1KXC5|I1KXC5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G39140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00239 | 208053 | 218133 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000239s00017904.1 | PF07690.11 | MFS_1 | 48 | 375 | 2.60E-17 |
| Glyur000239s00017904.2 | PF07690.11 | MFS_1 | 48 | 375 | 1.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.963 |
| SRR1783600 | control | 3.064 |
| SRR1783602 | moderate drought stress | 2.288 |
| SRR1811619 | moderate drought stress | 2.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.696 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.024 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.054 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.514 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 176.766 |
| SRR2868004 | Drought Stress (root) | 118.241 |
| SRR2967015 | Control (root) | 91.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.551 |
| SRR9715740 | Leaf | 50.933 |
| SRR9715741 | Leaf | 38.689 |
| SRR9715739 | Root | 6.429 |
| SRR9715742 | Root | 5.744 |
| SRR9715743 | Root | 4.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.419 |
| SRR8749028 | MeJA induced 9h | 0.302 |
| SRR8749029 | MeJA induced 9h | 0.210 |
| SRR8749030 | Uninduced | 2.589 |
| SRR8749031 | Uninduced | 1.126 |
| SRR8749032 | Uninduced | 1.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 92.572 |
| SRR8400027 | Control - Root | 39.031 |