Gene detail

Gene detail information of Glyur000239s00017901.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23380.2	1.00E-47	KNOTTED1-like homeobox gene 6
NR	KHN42527.1	1.13E-63	Homeobox protein knotted-1-like 6 [Glycine soja]
Swissprot	tr\|Q84JS6\|KNAT6_ARATH	2.00E-57	Homeobox protein knotted-1-like 6
trEMBL	tr\|I1KXC9\|I1KXC9_SOYBN	4.00E-64	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G39170.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00239	192973	193947	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000239s00017901.1	PF03789.8	ELK	29	50	6.00E-08
Glyur000239s00017901.1	PF05920.6	Homeobox_KN	69	108	1.60E-15

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.008
SRR1811619	moderate drought stress	0.151

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.159
DRR006520	Root Summer glycyrrhizin high producing strain	0.800
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.035
DRR006524	Root Summer glycyrrhizin low producing strain	0.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.303
SRR2868004	Drought Stress (root)	3.518
SRR2967015	Control (root)	5.795

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.055
SRR9715739	Root	0.000
SRR9715742	Root	1.987
SRR9715743	Root	2.113

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.938
SRR8749028	MeJA induced 9h	15.736
SRR8749029	MeJA induced 9h	44.907
SRR8749030	Uninduced	17.900
SRR8749031	Uninduced	9.608
SRR8749032	Uninduced	20.715

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.287
SRR8400027	Control - Root	0.580