Gene detail information of Glyur000239s00017900 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23380.1 | 2.00E-45 | KNOTTED1-like homeobox gene 6 |
| NR | XP_007153755.1 | 4.86E-88 | hypothetical protein PHAVU_003G062500g [Phaseolus vulgaris] |
| Swissprot | tr|Q84JS6|KNAT6_ARATH | 1.00E-66 | Homeobox protein knotted-1-like 6 |
| trEMBL | tr|V7C908|V7C908_PHAVU | 2.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:ESW25750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00239 | 175255 | 176203 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000239s00017900.1 | PF03790.8 | KNOX1 | 79 | 121 | 4.50E-24 |
| Glyur000239s00017900.1 | PF03791.8 | KNOX2 | 129 | 178 | 2.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.332 |
| SRR1811619 | moderate drought stress | 0.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.928 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.958 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.939 |
| SRR2868004 | Drought Stress (root) | 3.591 |
| SRR2967015 | Control (root) | 7.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.084 |
| SRR9715742 | Root | 4.920 |
| SRR9715743 | Root | 4.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.366 |
| SRR8749028 | MeJA induced 9h | 14.844 |
| SRR8749029 | MeJA induced 9h | 27.647 |
| SRR8749030 | Uninduced | 5.758 |
| SRR8749031 | Uninduced | 2.797 |
| SRR8749032 | Uninduced | 10.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.291 |
| SRR8400027 | Control - Root | 0.945 |