Gene detail information of Glyur000239s00017895.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23390.1 | 9.00E-62 | Kelch repeat-containing F-box family protein |
| NR | KEH20205.1 | 0 | F-box/kelch-repeat plant protein [Medicago truncatula] |
| Swissprot | tr|Q9LDE3|FBK9_ARATH | 2.00E-85 | F-box/kelch-repeat protein At1g23390 |
| trEMBL | tr|A0A072U316|A0A072U316_MEDTR | 0 | F-box/kelch-repeat plant protein {ECO:0000313|EMBL:KEH20205.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00239 | 137042 | 138554 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000239s00017895.1 | PF00646.28 | F-box | 18 | 52 | 0.00013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.767 |
| SRR1783600 | control | 17.263 |
| SRR1783602 | moderate drought stress | 63.256 |
| SRR1811619 | moderate drought stress | 63.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.849 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 72.154 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.922 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.957 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.763 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.941 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.845 |
| SRR2868004 | Drought Stress (root) | 84.502 |
| SRR2967015 | Control (root) | 59.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.076 |
| SRR9715740 | Leaf | 75.619 |
| SRR9715741 | Leaf | 89.272 |
| SRR9715739 | Root | 32.683 |
| SRR9715742 | Root | 61.398 |
| SRR9715743 | Root | 53.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.272 |
| SRR8749028 | MeJA induced 9h | 7.556 |
| SRR8749029 | MeJA induced 9h | 0.748 |
| SRR8749030 | Uninduced | 2.543 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.035 |
| SRR8400027 | Control - Root | 19.558 |