Gene detail

Gene detail information of Glyur000239s00017890

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68890.1	0	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases
NR	KEH20210.1	0	phylloquinone biosynthesis protein [Medicago truncatula]
COG	YP_005067649.1	2.00E-102	menaquinone biosynthesis protein MenD [Arthrospira platensis NIES-39]
Swissprot	tr\|Q15KI9\|PHYLO_ARATH	0	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (Precursor)
trEMBL	tr\|A0A072U318\|A0A072U318_MEDTR	0	Phylloquinone biosynthesis protein {ECO:0000313\|EMBL:KEH20210.1}

Sequence

Transcript Sequence

>Glyur000239s00017890.1
ATGCATTTGCCGGTGCCGGCGTTCCAAGCCTCGAGGCCCTGCAACGGTGCAGTGTTTCTGTTCCTCCCGCATTCCCATCCCTCATCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGCATTGGGCATTGGAGTTGCTCGGAGAGTGCTTCCGAGGGTTAAGGTCGCTGGAGGAGGAGTGAGATTCGACGGTCCTGTTCCNCTAAACGACGACGTCNAGGAAAGCGACGTCGTTTTCGAGCACTGCGTCACGCGGACTCTGCCTCCCGCGCTGACAGTGGCNGTGCCTCCGAGTCCGAAGGCGTTGAGTTGGTTTTGCTGTCAACCGGAGTCGTCGGGAGTGTTTCCTCTGATATTTGTTTCCAAGGACACGGACAATCCCACGTGTAAGTCACTCTATGTGAATGGAAGCCGTGGGGTTTTTGGCATAGGTGCTGCTGTTTCTTTTGTGCACTCTTCCACTCGAAAGCAGAGTTTGATCAGAAGATACATCTCAACTGATTCAACCGACATAGTGGCCTTTGGTTTTATGGATATTAATTTAGATAATGATTTGGTTCCCATGAGTCACGAGAATGGTTCTTTTTGCTTTTTCATCCCTCAGATTGAGTTAGATGAGCTGGATGGTGTTTCCATTNTGACAATGACACTTGCATGGGATGACTTTTCCCCCTCTACTTTTGAAGAAGCCCTTCATTTGCTTGAAGTTTCTCTAAACCAGGTTATATGTCATGTCTGGTCCACTTCTGGCATGGGGAAATCCAAATGCGTAAGAGCTGTCCTCAGAAAACTCAATTTGGTAGAAGATAGATCTATTCCAAGGGTCTATTGGAACACTATTGCGCTGGGAGGAAGAGAAAGTGTGGGTGACATCATGGAATTGAAAGAGTCTCCATCTTCTAGTCAATTCTGTGTCAGGCTTTCAGCAACACTTGCTGTTTCAAATAACATGTTGGATCATGCCAATGATTTTTTGCACTCAGTGAATGAAAGTGCCAACATCAATGCTGTTTGGGCATCACTTATAGTTGAAGAATGCGCAAGACTTGGTTTGACGTATTTTTGTGTTGCACCTGGATCTAGATCTTCCCCACTTGCTGTTGCTGCCGCAAGTCACCATTTAATCACATGTATTTCATGCTTTGATGAACGTTCACTTGCATTTCACGCTGTTGGATATGGAAGAGGTTCTCACATTCCAGCAGTAGTCATAACATCATCAGGCACTGCAGTTTCAAACCTCCTTCCAGCTGTTGTGGAGGCAAGCCAAGATTTTGTGCCGCTGGTTTTACTTACAGCAGATCGACCTCCAGAGCTGCTGGATTGTGGTGCAAACCAAGCAATTGATCAGGTGAACCATTTTGGTTCTTTTGTGAGATTTTTCTTTAATCTCCCTGCACCCACTGATCAGATTCCTGCGAAGATTGTACTTACTACACTTGATTCTGCTGTACATCGGGCAACTTCTNCTCCATGTGGTCCAGTGCATATTAACTGCCCTTTCAGAGAGCCTTTGGAAAGCAGTCCCCTCAGATGGTTGTCAAGCTGTTTAAAGGGATTAGACTTCTGGATGACTAATGCTGAACCATTTACCAAGTACATTCATATGCGATTGTCTCATCCATGTATAAATGCTCCTGGTGAAATGATTGAAGTTTTAAATCTGATTCCAAGAGCCAACAATAGTCTTCTACTGCTTGGTGCAATCCATACAGAGGATGAGATGTGGGCTGCTCTGCTTTTGGCTAAACACCTCCAGTGGCCTGTTGTAGCAGATATCTTGTCAGGGTTGCGGTTGAGAAAGCTTTTAACTTCTCTTCCTGATATTGAAAGAAATTTTATATTTGTTGATAATCTTGATCATGCTCTTCTCTCAGATTCTGTCAAGGGTTGGTTGAAGATCGATGTGGTTATTCAGATAGGAAGCAGGATAACTAGCAAACGCATTTGTCAATTTCTTGAGGAATGTGCTCCTTTTTCATATATTATGGTTGACAAGCATCCACTTCGTCATGATCCATCACATATTGTAACCCATCGGATACAAACTACCATTTTTGATTTTGTGGGTTGTTTACTTAAAGCTACAGTTCCACATACAAGGAACATGTGGAGCACTTCCCTACAATTGTTGAGTAAAATGGTATTAATTTCAAGAAATGAAAAGTTATTTCTTTTTGTTGAATGGCAGATACAATTTCAAATTANTGCTGAGAGTTCCCTAACTGAACCTTATGTTGCACATGTGATGTCAGAAGCTCTTTCCCCTGAGGCTGCTCTTTTTCTTGGTAACAGTATGCCCATTCGTGATGCAGATATATATGGACATAGTTGGTCCATATCCAGTCATGGTGATGCATCTCTTATGCTAAATTCAGACCTACCAATTAACTTGATGAGGGTGTTCTGTGTAATTGGNGATATTTCTTTACTGCATGATACAAATGGTCTGACAATTTTAAACCAACGCTATGCTATTGCTACTTTTACTTATATGATTCATAGATNATATTCTGAAAATATATCAACTTTTAGGAAATTGCGGAAACCAATGACGATTCTTGTGGTTAATAACCATGGAGGTGCAATTTTTAGTGTTCTTCCACTGGCAGATAAAGTTGAACACAGTATACTTCATCAATATTTCTACACCTCTCACAACATTTCGATTCGTGAGCTATGCATGGCACATAGTATTTTGAAAAAAATTGCTCTCCAAACTGCACAATCCACCATAAGATTCCTCTCAGCGCCTTTCAGTCAACACTCTATAAAAGATGAGTTCTGTTTATACAAAATTCATAAAATACAGTGTTCAAAATATAGATTTGCACTAGGTGCCCCACCAACATCAGCATCTGTTGGTGATAATTGTAAGGATTTTTATAGAGAAGGATTTATTTTATCTTTAATTCTTGANGATGGAAGTGTTGGTTTTGGTGAGGTTGCACCTCTTGAGATCCACAAGGAAAATCTGGTAGATGCAGAATATCAACTTAGGTTTCTTACTCATGTCATGGAGCAGGTTGATATTAGTTGCTTCCTCTCTCTATTGAAGGGCTCATTTTCATATTGGATATGGAATGAATTGGGCATCTTGCCATCTTCTATTTTTCCNAGTGTCAGATGTGGTTTGGAAATGGCTATCCTCAATGCCATAGCTAATGCAAAAAGCTCCAACTTNTTGAACATACTCCATCCCCCAACAAATGAGAACGACAAATATGAAAGTTCATTAGGAGTTCAGATTTGTGCACTAGTGGATGCAAATGGATCTCCAACTGAAGTAGCTAATGTTGCTGCCGCACTAGTCAAGGAAGGATTTTCTGCAATTAAGCTAAAGGTAGCACGTGGGGGCGATCCAATGCAAGATNCCATATTAATACAAGAAGTGAGAAAGAAAGTTGGTTGCCAGATTATCATCCGTGCAGATGCAAATCGAAACTGGACTTATGAAGAAGCTATGAAATTTGGCTCTTTGGTTAAGGATTGTAACCTGCAGTATATTGAGGAACCTGTTCAAGATGAAGATGATATTCTAAAGTTCTGTATAGAAAGTGGATTACCTGTTGCCCTAGATGAAACCATAGATGAAAGTCAAGAAAATCCCCTGCAAAAGCTAGTGAAGTTTACTCATCCAGGAATAGTTGCTGTTGTTATCAAGCCAAGTGTTGTTGGTGGATTTGAGAATGCAGCATCAATTGCACAATGGGCACACCAGCTTGGGAAGATGGCTGTTGTCAGTGCTGCATTTGAAAGCAGTCTGAGTCTATCTGCATATACTCAATTTTCTAGTTATCTTGAAATACTGAGATTAAATACATTCAAAGTGTCAGATGATGAGGCAGCACCTCCGGTAGCTCATGGTCTAGGAACCTATCGTTGGCTTAAAGAAGATGTAACACTTAATCCTCTTTTGATTGGTCGCAATCCACNTAGTGGTTTTGTTGAAGCATCTGTGGCAAATGCTAGTCGATTGCTACATAATTTTCAACTCAACCAGAATGTCATCTGTAATATTATTGCTGAGGAGCAAGTTCGTCAGTACCAATTGAAAGTAGAGCATAACAATTTATCTTGTTCCTTTGANGTTCGTGAGATTGGCCTAAAAACAAGTGATAATGTACTAGTATTTCTTCATGGTTTTCTTGGAACTGGTGAAGACTGGATTACTATCATGAAGACCTTTTCCGGAACAGCAAGATGCATCTCAATTGACCTTCCTGGTCATGGAAAATCGATATTACATGGTGTTANAAGTGCTGGTGAGGAACCATTGTTGTCGCTGGAGAAAATTGCTGATATATTACATAAACTAATTTGTAATGTAGCTCCAGCAGAAGTTACACTTGTTGGGTATTCAATGGGAGCAAGGATTGCATTGTATATGGCACTGAAATTTAGCAGTNAGACAAAGGGAGCTGTGTTAATATCTGCAAGCCCTGGACTAAAAGATACGTTGTCAAGAAAAATTCGTGCAGCNAAAGATGATTCCAGAGCACGTGCTATCATTACACATGGTTTACAACTTTTTCTTCACTCTTGGTATGCAGGAGACTTGTGGAAAAGCTTAAGAAGCCATCCTCATTTTAATCGAATCAGTGCTAGTCGCTTGGAGCATAATGACATACAGAGTCTTGCACAGATGCTGTCTGGATTAAGCACAGGAAGGCATAGGGCATTGTGGGAAGATTTGCCGAATTGCAGAGTACCTCTTCTGATCATACATGGAGAGAAGGATACGAAATTTAAGAAAATTGCTCAAGCAATGATGAATACAATGGGAAGTAAGCATGATGAAAAAGGGAGTGACATGCATGAGGTGGTTGAGGTTCCTAACTGTGGGCATGCTGCCCATTTGGAGAATCCTCTTCCTGTCATTGCTGCCTTGAGACAATTCATCACAAGGCTATAAAAGGTATACTGTCCAATCAGAGGATCAAGACATCATGTAATTGTCTTTTCGAGATGTGACATGTTGATTATAGCAGCTTTATGCAAGCCCAGCAAAAAGATTTGGGAATTTATATTCGCACATACATACTTTGCTATTTGCACATACATGTCCGCGGAACTATTAGTTCCACGGGTTTATTTTTTTTCCAACACACACATGCTGTGGAACTATTAGTTCCGCGGGTTGTAATTTTCCGCGGAACTATGTATGTGTTGAATTACAACCCGCGGAACTAATGTTCTGTGAGTTTATTTTTTTTTCCAACACACACATGTTGTGGAACTATTAGTTCCGCGGGTTGTAATTTTAGTTCCGCGGGCATGTATGTGTTGAATTACAACCCGCGGAACTAATAGTTCCGCGGAGAATTACAACCCACGGAACTAATAGTTCCACAGCATGTGTGTTGGAAAAAAAATAAACCTGCGGAACTAATAATTCCTCGGAGAATTACAACCCGCGGAACTAATAGTTTCACAGTATGTGTGTTGAAAAAAAAAAAACCTGCAAAACTAATAGTTCCCTNGATATGTATGTACAGATAGCAAAGTATGTATGTGCGAATATAAATTACCAAAGATTTTCAGTCCTGCAGAAATATGTATTCGGTACATTACATTTATGACACCTAACCATGTATGGATTTTCTTTTCTTCTTTTTTTCAAATTAAAAAAAAACTGTTA

Protein Sequence

>Glyur000239s00017890.1
MHLPVPAFQASRPCNGAVFLFLPHSHPSSTSSSSSSSSSSSALGIGVARRVLPRVKVAGGGVRFDGPVPLNDDVXESDVVFEHCVTRTLPPALTVAVPPSPKALSWFCCQPESSGVFPLIFVSKDTDNPTCKSLYVNGSRGVFGIGAAVSFVHSSTRKQSLIRRYISTDSTDIVAFGFMDINLDNDLVPMSHENGSFCFFIPQIELDELDGVSIXTMTLAWDDFSPSTFEEALHLLEVSLNQVICHVWSTSGMGKSKCVRAVLRKLNLVEDRSIPRVYWNTIALGGRESVGDIMELKESPSSSQFCVRLSATLAVSNNMLDHANDFLHSVNESANINAVWASLIVEECARLGLTYFCVAPGSRSSPLAVAAASHHLITCISCFDERSLAFHAVGYGRGSHIPAVVITSSGTAVSNLLPAVVEASQDFVPLVLLTADRPPELLDCGANQAIDQVNHFGSFVRFFFNLPAPTDQIPAKIVLTTLDSAVHRATSXPCGPVHINCPFREPLESSPLRWLSSCLKGLDFWMTNAEPFTKYIHMRLSHPCINAPGEMIEVLNLIPRANNSLLLLGAIHTEDEMWAALLLAKHLQWPVVADILSGLRLRKLLTSLPDIERNFIFVDNLDHALLSDSVKGWLKIDVVIQIGSRITSKRICQFLEECAPFSYIMVDKHPLRHDPSHIVTHRIQTTIFDFVGCLLKATVPHTRNMWSTSLQLLSKMVLISRNEKLFLFVEWQIQFQIXAESSLTEPYVAHVMSEALSPEAALFLGNSMPIRDADIYGHSWSISSHGDASLMLNSDLPINLMRVFCVIGDISLLHDTNGLTILNQRYAIATFTYMIHRXYSENISTFRKLRKPMTILVVNNHGGAIFSVLPLADKVEHSILHQYFYTSHNISIRELCMAHSILKKIALQTAQSTIRFLSAPFSQHSIKDEFCLYKIHKIQCSKYRFALGAPPTSASVGDNCKDFYREGFILSLILXDGSVGFGEVAPLEIHKENLVDAEYQLRFLTHVMEQVDISCFLSLLKGSFSYWIWNELGILPSSIFPSVRCGLEMAILNAIANAKSSNXLNILHPPTNENDKYESSLGVQICALVDANGSPTEVANVAAALVKEGFSAIKLKVARGGDPMQDXILIQEVRKKVGCQIIIRADANRNWTYEEAMKFGSLVKDCNLQYIEEPVQDEDDILKFCIESGLPVALDETIDESQENPLQKLVKFTHPGIVAVVIKPSVVGGFENAASIAQWAHQLGKMAVVSAAFESSLSLSAYTQFSSYLEILRLNTFKVSDDEAAPPVAHGLGTYRWLKEDVTLNPLLIGRNPXSGFVEASVANASRLLHNFQLNQNVICNIIAEEQVRQYQLKVEHNNLSCSFXVREIGLKTSDNVLVFLHGFLGTGEDWITIMKTFSGTARCISIDLPGHGKSILHGVXSAGEEPLLSLEKIADILHKLICNVAPAEVTLVGYSMGARIALYMALKFSSXTKGAVLISASPGLKDTLSRKIRAAKDDSRARAIITHGLQLFLHSWYAGDLWKSLRSHPHFNRISASRLEHNDIQSLAQMLSGLSTGRHRALWEDLPNCRVPLLIIHGEKDTKFKKIAQAMMNTMGSKHDEKGSDMHEVVEVPNCGHAAHLENPLPVIAALRQFITRL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00239	81130	102693	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14759	PHYLLO	EC:5.4.4.2 2.2.1.9 4.2.99.20 4.2.1.113	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process

GO:0009063 cellular amino acid catabolic process

GO:0009234 menaquinone biosynthetic process

molecular_function

GO:0030976 thiamine pyrophosphate binding

GO:0070204 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000239s00017890.1	PF02776.13	TPP_enzyme_N	341	507	2.50E-28
Glyur000239s00017890.1	PF01188.16	MR_MLE	1130	1195	4.10E-09
Glyur000239s00017890.1	PF12697.2	Abhydrolase_6	1378	1628	3.60E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.066
SRR1783600	control	1.067
SRR1783602	moderate drought stress	1.481
SRR1811619	moderate drought stress	1.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.593
DRR006520	Root Summer glycyrrhizin high producing strain	0.655
DRR006521	Root Winter glycyrrhizin high producing strain	1.124
DRR006522	Root Winter glycyrrhizin high producing strain	1.004
DRR006523	Root Summer glycyrrhizin low producing strain	1.899
DRR006524	Root Summer glycyrrhizin low producing strain	1.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.855
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.910

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.775
SRR2868004	Drought Stress (root)	6.434
SRR2967015	Control (root)	7.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.716
SRR9715740	Leaf	5.395
SRR9715741	Leaf	3.652
SRR9715739	Root	0.136
SRR9715742	Root	1.009
SRR9715743	Root	0.923

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.118
SRR8749028	MeJA induced 9h	4.907
SRR8749029	MeJA induced 9h	1.457
SRR8749030	Uninduced	0.806
SRR8749031	Uninduced	0.330
SRR8749032	Uninduced	0.959

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.444
SRR8400027	Control - Root	9.231