Gene detail information of Glyur000239s00017874 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25600.1 | 3.00E-69 | Calcium-binding EF-hand family protein |
| NR | KEH20220.1 | 2.01E-102 | EF hand calcium-binding family protein [Medicago truncatula] |
| COG | YP_001866396.1 | 1.00E-18 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9LI84|CML16_ARATH | 1.00E-87 | Probable calcium-binding protein CML16 |
| trEMBL | tr|A0A072U325|A0A072U325_MEDTR | 8.00E-103 | EF hand calcium-binding family protein {ECO:0000313|EMBL:KEH20220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00239 | 10321 | 10803 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000239s00017874.1 | PF13499.1 | EF-hand_7 | 11 | 72 | 4.00E-11 |
| Glyur000239s00017874.1 | PF13499.1 | EF-hand_7 | 86 | 147 | 1.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.076 |
| SRR1783600 | control | 0.101 |
| SRR1783602 | moderate drought stress | 0.158 |
| SRR1811619 | moderate drought stress | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.915 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.807 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.381 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.144 |
| SRR2868004 | Drought Stress (root) | 5.284 |
| SRR2967015 | Control (root) | 3.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.361 |
| SRR9715740 | Leaf | 29.269 |
| SRR9715741 | Leaf | 43.495 |
| SRR9715739 | Root | 2.007 |
| SRR9715742 | Root | 1.274 |
| SRR9715743 | Root | 1.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 1.451 |
| SRR8749029 | MeJA induced 9h | 0.121 |
| SRR8749030 | Uninduced | 1.838 |
| SRR8749031 | Uninduced | 5.361 |
| SRR8749032 | Uninduced | 1.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.302 |
| SRR8400027 | Control - Root | 2.499 |