Gene detail

Gene detail information of Glyur000239s00017873

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68710.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	KEH20221.1	0	phospholipid-transporting ATPase-like protein [Medicago truncatula]
COG	NP_266834.1	6.00E-16	cation-transporting ATPase [Lactococcus lactis subsp. lactis Il1403]
Swissprot	tr\|Q9SX33\|ALA9_ARATH	0	Putative phospholipid-transporting ATPase 9
trEMBL	tr\|A0A072TSN7\|A0A072TSN7_MEDTR	0	Phospholipid-transporting ATPase-like protein {ECO:0000313\|EMBL:KEH20221.1}

Sequence

Transcript Sequence

>Glyur000239s00017873.1
CTTTTTGGGGTTTAGCATCTGTTCCTTGCTTTAGTATTTGTTATTTGTACTTTTTTTACTGGGTAATTGTGCTAATGGGTTATGAAGTTTTATGAGGTATATTTGGGGTAGTTGTTGTTAGCATTTAGGATTCCTTTTTTGCTCTTGAAACTGAGCTCCTTAATTATTAAGTAGTATTCTGGTGAGTGAGTCTGCTTTGAAATTTGGGGTTGTTGGAAAGTTGCTATTTTGACTACTAGTTCTTGGCAGTGAAGTTTTTAGGAAGAGCAATTATTTCAGCTTAGAGGGCATTTCTACCTCTTGATATTGGATTAAAAATGAGGGGTGGGAAAAAAAGGAAGCTGCATTTAAGCAAGATCTACTCATTCACATGCTGCAAGGCATCNTCATCATCTGTGGAGGGAGATCATTCACAGATTGGATGTAAAGGTTATTCCAGGGTGGTGTTCTGCAATGAGCCAGATAGCGCCTGTGAGGCTTCTGCTTCTGGGGATAGAAATTATTATTATGCAGATGATAATTCTGTCAGATCTACAAAATATACAGCTGCTACTTTTCTTCCCAAATCACTGTTTGAGCAGTTTAGGAGGGTGGCTAACTTCTATTTTTTGGTCACTGGCATCTTGGCCTTCACAAAACTTGCTCCATATAAAGCTGTCAGTGCTATCCTTCCTCTTATTGTTGTTATTGGGGCAACTATTGTGAAAGAAGGTATTGAAGACTGGCGTAGGAAAAAGCAGAATGAAGTGCAAATTCCAGGATATGCTAAAAGATTTGATTCCTTTAAATTGCAGTGTGCACTTTATTATAGGGTAAAATGCCAGTGTGGAATTCNCCTNCAGGATATTGAGGTGAACAATAGAAGAGTTAAAGTTCATAAGGTTGATGGCATTTTTGAATATACTGCATGGAAGAATCTGAGGGTGGGGAATATAGTGAAGGTAGAGAAGGACGAGTTCTTCCCGGCAGACCTCCTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAANTTGAAGTTAAAACAAGGGTTAGAGGTAACTTCTTCCTTACATGAGGATCTCNACTTCAAAAANTTTAAAGCTACAGTCAAATGTGAAGANCCAAATGCAAANTTGTACTCATTTGTTGGGAGCATGGAGTTTGAAGAGCAAAACTATGCCCTTTCTCCTCAGCAACTTCTTCTGCGAGACTCTAAACTTCGTAATACAGACTNCATTTTTGGANCTGTCATCTTCACTGGTCATGACACTAAGGTTATTCAGAATTCTACTGATCCACCTTCNAAAAGAAGCAGAGTTGAGAAGAAGATGGATAGGATCATCTACTTCTTNTTTTGTATTTTGTTTCTAATGGCAGTCATTGGATCTATTTTCTTTGGCTTTTTGACTGAAGACGACATTCAAAACGGGTTGGTGAAAAGATGGTATTTAAGGCCAGATGATTCTGCGATTTTCTTCGATCCAAAAAGATCAGCCGCTGCTGCTGTATATCATTGTTTGACAGCCTTAATGTTATATGGCTTCTTTATTCCCATCTCTTTGTATGTGTCAATAGAAATTGTCAAAGTNCTTCAGAGCATTTTCATCAATCAAGATATCCATATGTACTACAAGGAAGAAGATAAACCAGCCCGTGCTCGCACTTCAAACTTGAATGAGGAGCTTGGCCAAGTTGACACNATACTTTCTGATAAAACTGGAACTTTGACCTGCAACTCAATGGAATTTATCAAATGTTCCATCGCTGGGGAAGCTTATGGCCGTGTTGTCACAGAGGTTGAGAAGACCATGGGTAGAAGAAAAGGTTCACACTTAATTCATGAGCATGATATATCAGAAGCAGATGACATCAGGAGTTCTCTTGATAAAAAAGCGGTCATAAAAGGTTTTAACTTTACTGATGAAAGAATAGTAAATGGAAATTGGGTTAATGAGCCTCATGCAGATGTTATCCAAAAGTTTTTTCGCCTATTGGCAATCTGTCATACAGCCATACCAGAAGTGGATAAAGACACCGGAAATATCTCATATGAGGCTGAATCCCCAGATGAAGCGGCGTTTGTTATTGCGGCAAGAGAACTTGGTTTTGAATTCTGCAAAAGGGCTCAGACTAGTTTATCGACATATGAGTTGGATCCAGTTTCTGGCAAGAAAGTTGAGAGGATGTACAAGGTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGAGAATGTCGGTAATAGTGGAAGATGAAGAAGGAAAATTTTTACTACTCTGCAAAGGTGCTGACAGTGTCATGTTTGAAAGACTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACCATGGAGCATGTGCATGAATATGCTGATGCAGGTCTAAGAACTCTTATACTGGCCTATCGCGAACTTGGAGCAGAAGAATACAAGGAGTTTGATAACAAATTCTCTAAGGCCAAGAATTTAGTTAGTGCTGATCGGGGAACACTGATTGAGGAAGTATCGGATAATATTGAGAAGAACCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCCGATTGCATTGACAAGCTTTCCCAAGCTGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCAATCAATATTGGTTTCGCTTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATAATTCNTTTGGATAGTCCAGAAATTCAAGCACTGGAGAAGGATGGGGACAAGATAGCTATTGCCAAGGTATCAAGACAAAGTGTTGTCCTTCAGATATCTGAAGGTGCTGCACAACTTTCTGCACACAGAGGAAGCTCTCAGAAGGCATTTGCTCTAATTATTGATGGCAAATCACTTGCTTATGCACTGGAGGATAATATAAAGGACATGTTTCTGGGGCTTGCAATTCGTTGTGCATCTGTTATTTGCTGTCGCTCATCGCCAAAGCAGAAGGCACTGGTCACCAGATTGGTCAAATCTGGAAGTGGGAAAACNACATTAGCTATTGGTGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCANATATAGGGGTTGGTATAAGTGGAGTTGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCACAATTCCGATATTTGGAACGATTACTTCTGGTGCATGGGCATTGGTGTTACCGGAGGATCTCATCTATGATATGCTATTTTTTCTACAAGAACATCACATTTGGTTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGAGAACCTGCATACAATGACTGGTTTCTGTCACTCTATAACGTCTTCTTTTCATCACTTCCCGTGATTGCTCTTGGGGTATTTGACCAGGATGTATCGGCTCGGTACTGCTTGAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTCCTTTTCAGCTGGCGTCGAATACTCAGCTGGATGATCAATGGATTCATCAGTGCCTTAATAATTTTCTTCTTCTGCACAAAGTCAATTGAGCTCCAAGCCTTTGATCAGGAGGGGAGAACAGCTGGGAGGGATATACTGGGAGCAACCATGTATACTTGTGTAGTTTGGGTTGTAAACTTGCAGATGGCACTAGCTATAAGTTACTTCACCTTGATCCAACATTTCTTCATCTGGGGTTCCATTCTTTTCTGGTATCTTTTCCTCCTGATATATGGGGCAATGCCTCCAAGCTTTTCTGAAAATGCATACAAAATCTTCATTGAGGCTCTTGCTCCTTCCCCTTCCTATTGGATTGTGACATTCTTTGTGGTNATCTCAACCCTCATACCATACTTCTCATACAAAGCGATTCAGATGCGGTTCTTCCCCATGCATCATGAAGTGATACAATGGATAAGGTATGAGGGGAAGAGTAAGGATCCTGAGTACTGTGACATGGTGCAGCAGAGATCGTTGCAGCCAACAACTGTCGGTTCAACAGCACGCTTAGCCGCCAAGGCAAACCAATCGAGAGAACAGAAATATTAACCAAAGATAACACATATTTTGAGATATAGTTTTAAATTTTAATCACCATCAAAGCATGTAGTTTATGTATAGCTTCCAAAAAAAAATGTAATTTATTGACCATAGTCATGGAATTGCTTGCTGGCTCACCTCAAACAGAAGAATATGTTGCTTGGCTCCAATTCCATGGTGATAGTATGGTGCATAGGACCAACATTTGACTNTGATGTTGGGTAGGAGAATAAAACTACATCTGTTTTGGCCATTTAAGGCTACATAGTGTTCATTTAACCTCCTTGTATCATAGATAGAAGCACTTACTGT

Protein Sequence

>Glyur000239s00017873.1
MRGGKKRKLHLSKIYSFTCCKASSSSVEGDHSQIGCKGYSRVVFCNEPDSACEASASGDRNYYYADDNSVRSTKYTAATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYKAVSAILPLIVVIGATIVKEGIEDWRRKKQNEVQIPGYAKRFDSFKLQCALYYRVKCQCGIXLQDIEVNNRRVKVHKVDGIFEYTAWKNLRVGNIVKVEKDEFFPADLLLLSSSYEDAVCYVETMNLDGETXLKLKQGLEVTSSLHEDLXFKXFKATVKCEXPNAXLYSFVGSMEFEEQNYALSPQQLLLRDSKLRNTDXIFGXVIFTGHDTKVIQNSTDPPSKRSRVEKKMDRIIYFXFCILFLMAVIGSIFFGFLTEDDIQNGLVKRWYLRPDDSAIFFDPKRSAAAAVYHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYKEEDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGEAYGRVVTEVEKTMGRRKGSHLIHEHDISEADDIRSSLDKKAVIKGFNFTDERIVNGNWVNEPHADVIQKFFRLLAICHTAIPEVDKDTGNISYEAESPDEAAFVIAARELGFEFCKRAQTSLSTYELDPVSGKKVERMYKVLNVLEFNSSRKRMSVIVEDEEGKFLLLCKGADSVMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELGAEEYKEFDNKFSKAKNLVSADRGTLIEEVSDNIEKNLILLGATAVEDKLQNGVPDCIDKLSQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIXLDSPEIQALEKDGDKIAIAKVSRQSVVLQISEGAAQLSAHRGSSQKAFALIIDGKSLAYALEDNIKDMFLGLAIRCASVICCRSSPKQKALVTRLVKSGSGKTTLAIGDGANDVGMLQEAXIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGEPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMINGFISALIIFFFCTKSIELQAFDQEGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHFFIWGSILFWYLFLLIYGAMPPSFSENAYKIFIEALAPSPSYWIVTFFVVISTLIPYFSYKAIQMRFFPMHHEVIQWIRYEGKSKDPEYCDMVQQRSLQPTTVGSTARLAAKANQSREQKY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00239	1190	8498	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000239s00017873.1	PF00122.15	E1-E2_ATPase	192	430	4.60E-12
Glyur000239s00017873.1	PF12710.2	HAD	467	920	7.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.881
SRR1783600	control	2.979
SRR1783602	moderate drought stress	3.821
SRR1811619	moderate drought stress	3.860

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.082
DRR006520	Root Summer glycyrrhizin high producing strain	4.007
DRR006521	Root Winter glycyrrhizin high producing strain	2.575
DRR006522	Root Winter glycyrrhizin high producing strain	2.560
DRR006523	Root Summer glycyrrhizin low producing strain	3.020
DRR006524	Root Summer glycyrrhizin low producing strain	2.797
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.850
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.868

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.920
SRR2868004	Drought Stress (root)	15.487
SRR2967015	Control (root)	21.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.225
SRR9715740	Leaf	9.218
SRR9715741	Leaf	11.008
SRR9715739	Root	0.794
SRR9715742	Root	6.184
SRR9715743	Root	5.624

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.148
SRR8749028	MeJA induced 9h	3.584
SRR8749029	MeJA induced 9h	1.188
SRR8749030	Uninduced	2.130
SRR8749031	Uninduced	1.639
SRR8749032	Uninduced	1.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.345
SRR8400027	Control - Root	8.331