Gene detail information of Glyur000238s00016802 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09060.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KEH23141.1 | 0 | pentatricopeptide (PPR) repeat protein [Medicago truncatula] |
| Swissprot | tr|Q9SS81|PP221_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g09060 |
| trEMBL | tr|A0A072U109|A0A072U109_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH23141.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00238 | 226384 | 228471 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000238s00016802.1 | PF01535.15 | PPR | 85 | 106 | 0.0032 |
| Glyur000238s00016802.1 | PF13041.1 | PPR_2 | 115 | 163 | 1.30E-10 |
| Glyur000238s00016802.1 | PF13041.1 | PPR_2 | 184 | 233 | 9.20E-14 |
| Glyur000238s00016802.1 | PF01535.15 | PPR | 258 | 286 | 3.00E-09 |
| Glyur000238s00016802.1 | PF13041.1 | PPR_2 | 291 | 339 | 1.00E-15 |
| Glyur000238s00016802.1 | PF01535.15 | PPR | 363 | 389 | 0.00049 |
| Glyur000238s00016802.1 | PF13041.1 | PPR_2 | 399 | 444 | 2.20E-10 |
| Glyur000238s00016802.1 | PF12854.2 | PPR_1 | 461 | 494 | 3.00E-06 |
| Glyur000238s00016802.1 | PF13041.1 | PPR_2 | 500 | 549 | 8.30E-20 |
| Glyur000238s00016802.1 | PF12854.2 | PPR_1 | 568 | 597 | 1.50E-06 |
| Glyur000238s00016802.1 | PF13041.1 | PPR_2 | 607 | 655 | 7.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.964 |
| SRR1783600 | control | 0.962 |
| SRR1783602 | moderate drought stress | 1.769 |
| SRR1811619 | moderate drought stress | 1.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.418 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.651 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.552 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.666 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.925 |
| SRR2868004 | Drought Stress (root) | 2.983 |
| SRR2967015 | Control (root) | 3.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.861 |
| SRR9715740 | Leaf | 0.897 |
| SRR9715741 | Leaf | 1.250 |
| SRR9715739 | Root | 0.304 |
| SRR9715742 | Root | 0.675 |
| SRR9715743 | Root | 0.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.402 |
| SRR8749028 | MeJA induced 9h | 2.240 |
| SRR8749029 | MeJA induced 9h | 0.589 |
| SRR8749030 | Uninduced | 0.183 |
| SRR8749031 | Uninduced | 0.086 |
| SRR8749032 | Uninduced | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.136 |
| SRR8400027 | Control - Root | 3.629 |