Gene detail information of Glyur000238s00016796 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38070.1 | 3.00E-59 | Protein of unknown function (DUF740) |
| NR | XP_004514489.1 | 0 | PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9SS80|U503A_ARATH | 5.00E-136 | UPF0503 protein At3g09070, chloroplastic (Precursor) |
| trEMBL | tr|A0A072U007|A0A072U007_MEDTR | 0 | DUF740 family protein {ECO:0000313|EMBL:KEH23119.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00238 | 194737 | 196989 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000238s00016796.1 | PF05340.7 | DUF740 | 34 | 732 | 5.30E-195 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.775 |
| SRR1783600 | control | 20.686 |
| SRR1783602 | moderate drought stress | 13.035 |
| SRR1811619 | moderate drought stress | 11.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.525 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.189 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.243 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.886 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.356 |
| SRR2868004 | Drought Stress (root) | 19.252 |
| SRR2967015 | Control (root) | 23.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.053 |
| SRR9715740 | Leaf | 0.109 |
| SRR9715741 | Leaf | 1.082 |
| SRR9715739 | Root | 15.259 |
| SRR9715742 | Root | 10.807 |
| SRR9715743 | Root | 11.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.607 |
| SRR8749028 | MeJA induced 9h | 4.141 |
| SRR8749029 | MeJA induced 9h | 3.217 |
| SRR8749030 | Uninduced | 0.787 |
| SRR8749031 | Uninduced | 0.109 |
| SRR8749032 | Uninduced | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.046 |
| SRR8400027 | Control - Root | 31.839 |