Gene detail

Gene detail information of Glyur000238s00016792

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38060.1	3.00E-174	phosphate transporter 4;2
NR	KEH23123.1	0	anion transporter 4, putative [Medicago truncatula]
COG	YP_003588376.1	2.00E-49	major facilitator superfamily protein [Kyrpidia tusciae DSM 2912]
Swissprot	tr\|Q7XJR2\|ANTR3_ARATH	0	Probable anion transporter 3, chloroplastic (Precursor)
trEMBL	tr\|A0A072U1S6\|A0A072U1S6_MEDTR	0	Anion transporter 4, putative {ECO:0000313\|EMBL:KEH23123.1}

Sequence

Transcript Sequence

>Glyur000238s00016792.1
ATGGCTGCTNCAAACTCAGCACCATCCCGTATGTGTTCCCCCAAAAGGGGATCTTTATCTTGTTCCTTAGCACCCCATTTGAGTTTTGTCAGTTATAAGAAGGCCCAGTTGGGATTTGAGTCCAAAATCTCAGCCAGAAAACTGGAATGGAAGAGCAGAGGAAGAAAAACANAGGAGTGGCAGAGCAACAGAAGGAGACAATGGGGTGTGAGGTGCACTGCAGAAGGCATAGATGGAAGGAGAATGGTTAGAGAAGATGGGNTTGTTGTTAGCATCCCAGAGAGGTTCAAGGTGGTGTCTTTAGTGGCATGTGTTATGTGTTTGTGTAATGCTGATCGTGTTGTCATGTCTGTGGCTGTTGTTCCCTTGGCTGCCAAACATGGTTGGTCTAGTTCTTTTCTTGGCATTGTTCAGTCATCTTTCCTGTGGGGTTACATATTCTCTTCAGTGATTGGAGGAGCTTTGGTAGATAGATATGGAGGAAAGAGGGTAATGGCCTGGGGTGTATTTTTGTGGTCCTTGGCAACTCTTCTTACACCTTTGGCAGCCAACCACTCCACAATGGGCTTGTTGGCGGTTCGTGCTTTCTTTGGACTAGCTGAAGGAGTGGCTCTTCCATCCATGAGCACTCTCTTATCAAGGTGGTTTCCAAGTAATGAGAGAGCAAGTGCTGTTGGAATCTCAATGGCTGGATTTCATATTGGCAATGTCATAGGCTTGTTGCTAACACCAATTATGTTGTCCACTATTGGAATTTCTGGTCCTTTTATCTTATTCTCATCCCTTGGGTTGCTCTGGGCAATGACATGGGCATACCGAGTTACAGATGATCCTTTGGAAAGCAATTTCATCAGCAGATCAGAACTAAGATTAATCCAAGCTGGGAAAAGTGGTTCACCAAAAAAAAGCAACAAGTTTCCCCCCCTACGCCTTCTTTTATCGAAATTACCATCGTGGGCTATAATATTTGCCAATGCAACTAACAACTGGGGGTACTTTGTTCTCCTCTCATGGATGCCGGTTTATTTCAAAAGCGTATATAATGTGAATCTGAAGCAGGCAGCTTGGTTTAGTGCAGTTCCATGGGCAACAATGGCAATTTCAGGTTATCTAGCTGGTGTTGCATCAGACTCCTTAATCAATGCAGGGCACCCCACAACATTTGTCCCTGTGGCCTTGCTCTGCTTGAATTATGCCAATACACCAACAACTGCTGCTACACTCATGACTGTAGCTTTGAGCTTGAGCTCTTTCAGCCAAGCTGGCTTTATGCTCAACATACAAGACATTGCTCCTCAGTATGCAGGAATTCTACATGGAATATCAAATTCAGCTGGAACTTTAGCAGCTATCATAAGCACAATTGGAACTGGTTATTTTGTGCAATGGCTGGGATCATTTCAAGCATTCCTAACTGTAACAGCAGTTCTCTATGTTGTGACAACCATTTTTTGGAATCTTTTTGCCACAGGCGAGCAAGTTTTGTGACTTCTTTATCAAAAAAAAAAAATTCCCCCATACCTTGAGTTACATATCATCAAAAGCACAGGAAATTGTGAATTTCAAATTTTCATTATACTCTATAAGAAATAAATGAGAAGCATTTTCTCCCTCTCCCCCTCTCTAGTTTCATATCAAAAAGAAAATTGTAATATTTTCAACAAAAGAAGTACTTACACAAAATATTTCAAGTATATATGTCCATAGTTTAGATCATTCCGAAAACATTAAGTATAGAAATACGTTGTTAACAAGTTACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00238	149329	153355	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000238s00016792.1	PF07690.11	MFS_1	103	453	3.90E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.631
SRR1783600	control	1.707
SRR1783602	moderate drought stress	1.105
SRR1811619	moderate drought stress	1.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.124
DRR006520	Root Summer glycyrrhizin high producing strain	3.076
DRR006521	Root Winter glycyrrhizin high producing strain	0.099
DRR006522	Root Winter glycyrrhizin high producing strain	0.123
DRR006523	Root Summer glycyrrhizin low producing strain	3.843
DRR006524	Root Summer glycyrrhizin low producing strain	3.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.675
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.410

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.284
SRR2868004	Drought Stress (root)	5.732
SRR2967015	Control (root)	4.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.982
SRR9715740	Leaf	4.507
SRR9715741	Leaf	7.914
SRR9715739	Root	1.952
SRR9715742	Root	3.125
SRR9715743	Root	2.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.948
SRR8749028	MeJA induced 9h	10.506
SRR8749029	MeJA induced 9h	9.878
SRR8749030	Uninduced	29.926
SRR8749031	Uninduced	85.790
SRR8749032	Uninduced	15.514

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.448
SRR8400027	Control - Root	11.038