Gene detail information of Glyur000238s00016789.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01290.10mRNA capping enzyme family protein
NRXP_006602636.10PREDICTED: mRNA-capping enzyme-like isoform X1 [Glycine max]
trEMBLtr|K7MTE7|K7MTE7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G42375.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00238132303143970+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K13917RNGTTEC:2.7.7.50 3.6.1.-mRNA surveillance pathwaymap03015
mRNA surveillance pathwaymap03015
mRNA surveillance pathwaymap03015


Gene Ontology

biological_process

GO:0006370  7-methylguanosine mRNA capping

GO:0006397  mRNA processing

GO:0006470  protein dephosphorylation

GO:0016311  dephosphorylation


molecular_function

GO:0004484  mRNA guanylyltransferase activity

GO:0004725  protein tyrosine phosphatase activity

GO:0008138  protein tyrosine/serine/threonine phosphatase activity

GO:0016791  phosphatase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000238s00016789.1PF00782.15DSPc1402592.40E-17
Glyur000238s00016789.1PF01331.14mRNA_cap_enzyme3595371.60E-63
Glyur000238s00016789.1PF03919.10mRNA_cap_C6937574.10E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.402
SRR1783600control10.119
SRR1783602moderate drought stress14.817
SRR1811619moderate drought stress14.856

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.198
DRR006520Root Summer glycyrrhizin high producing strain15.179
DRR006521Root Winter glycyrrhizin high producing strain15.785
DRR006522Root Winter glycyrrhizin high producing strain15.402
DRR006523Root Summer glycyrrhizin low producing strain16.975
DRR006524Root Summer glycyrrhizin low producing strain16.754
DRR006525Leaf Summer glycyrrhizin high producing strain10.898
DRR006526Leaf Summer glycyrrhizin high producing strain11.035

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)17.739
SRR2868004Drought Stress (root)22.150
SRR2967015Control (root)25.501

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf18.293
SRR9715740Leaf21.625
SRR9715741Leaf19.703
SRR9715739Root2.406
SRR9715742Root10.360
SRR9715743Root8.907

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.308
SRR8749028MeJA induced 9h9.965
SRR8749029MeJA induced 9h7.529
SRR8749030Uninduced7.912
SRR8749031Uninduced14.870
SRR8749032Uninduced9.520

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root21.124
SRR8400027Control - Root21.017

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved