Gene detail

Gene detail information of Glyur000238s00016783

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54110.1	1.00E-132	plant uncoupling mitochondrial protein 1
NR	KEH23115.1	0	uncoupling protein [Medicago truncatula]
Swissprot	tr\|O81845\|PUMP1_ARATH	0	Mitochondrial uncoupling protein 1
trEMBL	tr\|A0A072UB99\|A0A072UB99_MEDTR	0	Uncoupling protein {ECO:0000313\|EMBL:KEH23115.1}

Sequence

Transcript Sequence

>Glyur000238s00016783.1
CAATTTTCTTTTAAAGTAGATCTCCAAAGAGATCGACATAAGATTACGAAAATTTCACAGTGGCGATCAGTGTGACATAAAAGCAAAAAAAAAAGGAGGTTTTTTTCCTTCCTTCGTCTGAAACCACAATTCTGCTTCTACTTCTTCTCGATTGTTTTTTATTCCTTCTTTTGTTTTCTCTCTTCACTGGTTGTCCCATTAACCGTAACATTTTTTGGCCTCTTTTGAAGCCATGGTAGCAGGTGGCAACACCAAATCCGACATCTCCTTTGCTNGCACTTTCGCCAGCAGTGCTTTCTCTGCATGTTTCGCCGAGGTATGTACTATTCCTCTGGACACTGCCAAAGTTAGACTTCAGCTTCAAAAGCAAGCTGTAGCTGGTGATGCAGTGACCTTACCCAAATATAAGGGTATGCTGGGAACAGTTGCAACTATTGCCAGGGAAGAAGGTCTTTCAGCACTATGGAAGGGAATTGTGCCAGGGCTACACCGTCAATGTTTGTATGGTGGTTTAAGAATTGGGTTATACGAGCCTGTTAAGACTTTGTATGTTGGGAGTGACCATGTTGGAGATGTTCCTTTGTCAAAGAAAGTTCTCGCTGCATTAACAACTGGTGCTGTGGCAATTGCAGTAGCAAATCCTACTGATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTGCCTCCTGGTGTGCCAAGGCGCTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAAACAGGAAGGGATTGGAGCTCTTTGGACNGGCATTGGCCCAAATATAGCAAGAAATGCTATCATTAACGCTGCTGAACTAGCCAGCTATGANCAAGTGAAACAGACCATTTTGAAAATTCCAGGGTTCACTGACAATGTTGTAACACATCTTCTTGCTGGTCTAGGGGCAGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTCGATGTGGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAAAGCACAGTTGATTGTTTCGTCAAAACATTAAAAAATGATGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACTCTAGAACAGACTAAAAAGTTTGTCAGAAGTTTGGAATCAGCCTGAGCTCAACCAATTACCAGTAGAAAATTTTGAGAATGTCCTCAACTGGAAGTGCAATGGAAATCATCGAGAAAATAAAACTCCTCTTCTCTNCATTTTCACTACTTGAATGTATCGAAACATTTTTTTTTTGGTGTTTTGGTGGGGGGGTGCGGGGAGGAGGAAAAATGAGGTATTAATAAATGCTAAACCTTTTAAACTATATTATATTTCTTTTGTAATTCTCTTACAATTTTATTAGGCGCTGNGCTTGAGTAGTTTGATGGGATCCAAACCTCAAAAAATCACGTGAAACCTTGATAAATTAAGCATGAAGCATCAAGTTTGAAATTCACAATCACCATATTTTCTTTTGTTAGTTTAGCTTCTATTCTACATTTGCAGCAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00238	80398	85689	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006839 mitochondrial transport

cellular_component
GO:0031966 mitochondrial membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000238s00016783.1	PF00153.22	Mito_carr	10	107	1.10E-19
Glyur000238s00016783.1	PF00153.22	Mito_carr	115	208	5.70E-21
Glyur000238s00016783.1	PF00153.22	Mito_carr	215	300	2.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.451
SRR1783600	control	9.446
SRR1783602	moderate drought stress	6.328
SRR1811619	moderate drought stress	6.319

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.608
DRR006520	Root Summer glycyrrhizin high producing strain	19.303
DRR006521	Root Winter glycyrrhizin high producing strain	9.874
DRR006522	Root Winter glycyrrhizin high producing strain	9.458
DRR006523	Root Summer glycyrrhizin low producing strain	13.939
DRR006524	Root Summer glycyrrhizin low producing strain	13.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.682

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.300
SRR2868004	Drought Stress (root)	13.272
SRR2967015	Control (root)	10.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.379
SRR9715740	Leaf	8.503
SRR9715741	Leaf	9.662
SRR9715739	Root	4.811
SRR9715742	Root	10.174
SRR9715743	Root	8.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.199
SRR8749028	MeJA induced 9h	5.006
SRR8749029	MeJA induced 9h	4.115
SRR8749030	Uninduced	7.049
SRR8749031	Uninduced	2.385
SRR8749032	Uninduced	2.359

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.753
SRR8400027	Control - Root	20.657