Gene detail

Gene detail information of Glyur000238s00016778

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38000.1	2.00E-144	chaperone protein dnaJ-related
NR	XP_004514481.1	0	PREDICTED: protein SSUH2 homolog [Cicer arietinum]
COG	YP_001546484.1	4.00E-09	serine/threonine protein kinase [Herpetosiphon aurantiacus DSM 785]
trEMBL	tr\|I1KK89\|I1KK89_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G17240.1}

Sequence

Transcript Sequence

>Glyur000238s00016778.1
ACAAAGTAACAACAAAAATTATGGTCTTGGATTTGCCGTTCGTTGTGTCACAAAATTATTACCAGAACAGANCGGCAAGTCAGCATCATGCCGTGTATTAAGAGCGTGTACCATCCACAACGATCATATCACATTCACAGCACCGTTTGACTCGTGTGATTTGTATAATCCACANTTCTAGTTCCTTAATGGCAAAGGTAAAACCCAACACATGAGCCACTGTAATCCACAACACGGTCTCTGAGCTATTTCTTCGACCACCATGGAGGAGCCTTTGCTATCGGAACAAAGAAGGGAATCGGTTGAGAAGGANAGTGGAAAATGGAGCTCGTATCAGTATGTGGGTGGAACCAATTCTGGTGGGATACCTACTTCTTCATTGGCTGGAACTGATGTGAGTGTGGATGAAATACGATCTGCTGCTGCTGCTTCTTCTGCTTCTACAGGTTACTATCCCCCTTCCCTTCATGGGGCTTTGGTTGGATCNCCCGAGCCTGATCCTACCGTGCAAGCTCTCGTTTATCAAGGAGGATATGGAGGAGATTATGGTGGACCCAGACCCGAATTCCGCAGGGAAGTCTTGGATGAAGTAGAGATACGAGAGCTGCTCATTGATCATGTTGGTCATCGTTGTTGTTGGGGTAGCCGTCCTGCTCGAACATGGAGGATTCATGCAGTGGAAGACTGTAATGTTTATGTTGGGACCCTGGATACATTCATAGAGGAAAGAGAGATCATAAAAGAGACAGAGCCATACCTTGATAGCAGTATCGATGGAAAGGATAAAGGACCTGAACTTGGTGTTTGGGAATTGGATCTACGGTCTCAGTTCCCTGTTCTATTTGTACCTTACAAAGAAGTGCGCAAAACGATTCCTCATTCTGAAAAGATTGAGAAATGCTCAGGTTGTGAAGGACGAGGAAGTCTAGTCTGTGCTACGTGCAATGCAGGCCAAGAACCTGGATATTATAAACAAAATCAGATGGCTCAGTGTCCTACTTGTTATGGAAGGGGTTTGATTGCTCATAAAGATGGTTCTGATACAATATGTGTGAAATGTAATGGTAAAGGGAAGCTTCCTTGTGTGACTTGTGGATCTCATGGATTAATTAAGTGTGCGACGTGTAATGGAAGTGGTTCGCTTCTAGCACGCAGAGCAGCATCAGTACCAGATGAGGTTTTCCACAGATCCAAAGGGGTTCAATTATGCAACACTCAGGCTAACCAATGCACTCCTGCCTTTTTTGCTGATTCCTTTTTTCTCAACAATTTCTCTTCTGAAGTCATTGCTGAGAGAGCTCAAGTACCTGCAACAGCAAGGGTCATATGTGAGAGGCATACAATCTCAGTCGTGCCGGTAACTCGTGTCACCATGGCCCATCGCCGGCAATCCTTCAGTTTCTATATTATTGGATACAGCAGGGAGGTTTACTTAAAGGATTATTACCCTTCTAGATATTGTTGGGGCTTGTGTCCCTGTTTGGAGTGGTTGAAGTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00238	43165	47951	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0031072 heat shock protein binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.787
SRR1783600	control	14.770
SRR1783602	moderate drought stress	12.017
SRR1811619	moderate drought stress	11.572

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.178
DRR006520	Root Summer glycyrrhizin high producing strain	49.544
DRR006521	Root Winter glycyrrhizin high producing strain	30.578
DRR006522	Root Winter glycyrrhizin high producing strain	28.945
DRR006523	Root Summer glycyrrhizin low producing strain	32.818
DRR006524	Root Summer glycyrrhizin low producing strain	32.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.834
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.341
SRR2868004	Drought Stress (root)	33.824
SRR2967015	Control (root)	32.462

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.151
SRR9715740	Leaf	34.443
SRR9715741	Leaf	55.947
SRR9715739	Root	27.633
SRR9715742	Root	71.835
SRR9715743	Root	63.502

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.614
SRR8749028	MeJA induced 9h	60.379
SRR8749029	MeJA induced 9h	47.734
SRR8749030	Uninduced	33.544
SRR8749031	Uninduced	16.047
SRR8749032	Uninduced	18.828

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.202
SRR8400027	Control - Root	32.315