Gene detail

Gene detail information of Glyur000238s00016775

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01090.1	8.00E-47	Concanavalin A-like lectin family protein
NR	AFK44294.1	0	unknown [Lotus japonicus]
COG	YP_003890765.1	2.00E-13	legume lectin beta domain-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9LSS0\|LRK17_ARATH	3.00E-14	L-type lectin-domain containing receptor kinase I.7 (Precursor)
trEMBL	tr\|I3SVK2\|I3SVK2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK44294.1}

Sequence

Transcript Sequence

>Glyur000238s00016775.1
ATGGCAACATTTCCCACTTCCCACCACTTCACAGCCTTAACCTTCCTCATCTTGTTCCTCAAAACCCAAGCTTTTGATCCAGTTCCATCCTTTTCCTTCACAGATTTTGGAGAAGATCCGAAATTTAACTCAGTTGTGGGACTCTATGGCAATGCAAAGGTTGTCAATGGTGGTTCTGAAGTCCTTCTTTCTGGGCATGGGAATTCAGGCAGTGGGAAAGTCATGTACAAGAAACCCATCAAGCTTGTTGATGGCATAGCAAGGAGATTGGTCTCATTCTCAACCTACTTTGCATTTTCAGTGTCCTTGGATGATGGGAATGGCTTGGCTTTTGTTATGGTTCCAAGTGGTCTTCAAGGTGAGGTTTTTTATAATAATAGTTCATCTGGTTTTTCTTTTGGATTGAAGGAAAGGAAATCTAAGGTTATTGCTGTTCAGATTAGTGCTTCAAGAGATGGTACTAGAAATAAGAGTTCTGCTAGTTGTAATGTGGCCATCAATGTTGGTAGTTCTATTCCTGCTAAGAAAATGAATACCTCTTCTGTCAATATGGGTATAAGAATTGGGGGAAAGCTTCATGCTTGGATTGATTATGAAGCGAGTTCGAGGCGCTTAGAAGTTAGATTGAGTCAATATGGTGTTTCAAGGCCAGCTGATCCATTGCTCTGGCACTCAATTGACTTCTCAAGTNTGTGGAAGGCTGAAGAGATGTTTGCAGGCTTTAGTTCAATAAAGGGGAAAACTTCTCAAGCATGTTTTCTCTATTCATGGAGCTTTATTGTAAGGCATTTTCCACATTGGATGCATTCTGAGCCTCTGGATCCGAAGGTCCTTGCTAAGAACACAGAAAGTCCAGCCCTCCCAGCAGTGAAACCAAGGAGTGATTGCCTCTTGAGAGTTCTTGCTGCAATGATATTTGGTGCTGGATGTGGAGCATTGGCAGCATTCNTTGTGCTTTACCTGTGGACCATCTTCGGTAACAGGCGCCCCGTGGTGCCGGAGGAGTGTGTTGTGCAGCCTGTGGATTTTGAGTACAAGAAAGTGAACATTGTTGTAGTTAAACCCAGTAAAGATGCTAAGGAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00238	27651	28736	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000238s00016775.1	PF00139.14	Lectin_legB	30	259	2.50E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.856
SRR1783600	control	20.546
SRR1783602	moderate drought stress	10.229
SRR1811619	moderate drought stress	10.353

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.589
DRR006520	Root Summer glycyrrhizin high producing strain	22.987
DRR006521	Root Winter glycyrrhizin high producing strain	3.402
DRR006522	Root Winter glycyrrhizin high producing strain	3.990
DRR006523	Root Summer glycyrrhizin low producing strain	12.563
DRR006524	Root Summer glycyrrhizin low producing strain	14.762
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.501
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.834

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.876
SRR2868004	Drought Stress (root)	25.227
SRR2967015	Control (root)	25.111

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.343
SRR9715740	Leaf	6.773
SRR9715741	Leaf	6.363
SRR9715739	Root	26.750
SRR9715742	Root	17.087
SRR9715743	Root	17.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.376
SRR8749028	MeJA induced 9h	9.303
SRR8749029	MeJA induced 9h	6.393
SRR8749030	Uninduced	1.753
SRR8749031	Uninduced	1.240
SRR8749032	Uninduced	1.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.841
SRR8400027	Control - Root	33.865