Gene detail

Gene detail information of Glyur000237s00014415

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02260.2	0	RELA/SPOT homolog 1
NR	XP_004494394.1	0	PREDICTED: GTP pyrophosphokinase-like isoform X1 [Cicer arietinum]
COG	YP_003683826.1	2.00E-159	(p)ppGpp synthetase I SpoT/RelA [Meiothermus silvanus DSM 9946]
Swissprot	tr\|P0DKG8\|RSH1L_ARATH	0	Putative GTP diphosphokinase RSH1, chloroplastic (Precursor)
trEMBL	tr\|V7D0I6\|V7D0I6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35138.1}

Sequence

Transcript Sequence

>Glyur000237s00014415.1
GAGCGAAACAGGATATCTCCTTTGAAGCCTGTGTTTGTTATCTGTCTTCTTTCTTTCTCTCTGCCCAAACCNCACCTCTCCTCTTTTCATCGACAGACTCTCACTCCCACAACCGCAACACACATCCCTTCTATCCCAATTCCGATTCACTCTCTCTTCTCTTCCCCTTTTCCCTCCAAAACCCAATGACCCTATCATTACACACGCTCATGCGATTCAAAATTCAATGAAATTCCTCTGTTTATTCAAANTATGGCATCTGCACCTTCCATGTCNGTTTCTTTGGAGTGCGTGAACGTATGTAATCTGTGGAGAGGGGATGGAAGTGGAAGATTCGATTGTAGTCTTCTATCGTGCGCGTGGAAAGCCCCTAGGGTCCTTACTGGGTTTCTTGCGAGCACGGCTCACCCTCATCTCTNTTCGTCCTTGTTGTCCAATGGGCGAAATGGAAGAAGGAACCGGTATAATTTTGCATGCGAAGCGTTTAGTATGGTAGGTTCAGATCCCGATGAGGCACTCGATATCCTACGTATAGAAAGATTCTCTAGATCTATCTCGTCTATAATTGCTCCTAGAAGATGGCAATTATGTTGNACGTCGGCCTTCTCCTCGTATACTGACAGCGAGTTTTCCCGCGAAAGTTTATGGGAGGATCTTAAACCCGTGATCTCGTATCTGTGCCCTAAAGAACTGGAGTTAGTCCGTAATGCTTTCATGTTGGCATTTGAAGCTCATGATGGTCAGAAAAGACGTAGCGGTGAACCCTTTATCATTCATCCAGTTGAGGTNGCGCGAATTCTCGGAGAACTTGAACTTGACTGGGAGTCGATCGCTGCTGGATTACTTCACGACACAGTTGAAGATACAAATGTCGTGACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACCAAGGTGTCAAAGCTGGGGAAATTGAAGGTTAAGAATGAAAACAATTCCGTTCAAGATGTGAAAGCGGAGGATCTTCGGCAAATGTTTCTGGCAATGACAGAGGAGGTTCGTGTTATTATTGTCAAATTGGCAGACAGNTTACATAACATGCGCACTCTATCACATATGCCTCCCCATAAACAGGCTAGCATTGCGATGGAGACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAANTAGAAAATCTATCATTTATGTACACAAATGCTGAAGATTATGCTAAGGTGAAGAGAAGAGTTGCAGATCTATACAAAGAACACGAGAAAGAACTTTTAGAGGCAAACAAAATATTGGTAAAGAAAATCCAAGATGATCAATTCTTAGACCTTTTGACAGTTAAAACAGAAGTCCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTACTCAAATCAAGAAGTTTGATCAATGAGATTAANCAAATTGCACAGCTTCGTATTATTATTAAACCAAAGGCGTGCATTGGGGATGGGCCTTTATGCAGTCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCAAAACCTAATGGCTACCAGAGTCTTCATACCACTGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCAGCTCATTATAGTGGGAGAGAATTTGTCACTGGCTTAGTTGGCAGTGCACTGCCCAGTGGNAGAAGCTCAAGAGGGAAGACAGTGTGTCTTAACAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTTTTGGGCAGTCGTGTCTTTGTGTTTACACCCAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTAATTGACTATGCCTATATGATACACACTGAAATCGGCAACAAGATGGTAGCCGCGAAGGTCAACGGTAATCTTGTTTCTCCTGCACGTGTGCTCGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGTTCTGCTGCTGATATCACTACAGAAGCAATCAATGACTTTGTCACTGATTCTGAAGGGGATAGTGAATCTGAAGAACTGTCAAATGGTTCCAAACATAAGCNGGGGAAAATGTTCGTGAATGGTGTGGAAATATCAACTCCAGAAAGAAGTGGGATTGTCCTCCAAAGTAAGAATGGAAGTGTTTGGTCCCCCAAGGTCAATGGAAAACATAATAAGCATGTGCATCCTGTAAGTTTGAAGGGCAAAGGGGAGATGCTGCTGCAGGGAGACCATGTTGCCAAGATGATTCAAGTTAACATTCCAAAATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCCTCTTGGCACAATGTAGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGCATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCNGACTTAACCGTGAGTGCTTGCTCTAGAATAGATCTAATACTGGGCGTTTTGGGATGGTCTACTGGTTGCAGCTGGCCAAGCTNGATGGAAGACCGTGGCTTTCTCGAATGCTAGTTGATTTGGTAGCAGTTGCACTTGGCCAGGCCCCAACTACAGCTTGCCACCAGACCTGGAACGAAGTTTTGTCCGCAGCANCGCAGGCATTTATATGTCTAAATTTTGGTTTATAGTTCTCATATTTGTTCCAACTTACTAACCCAATAAACCGGCAGCAGCCAATTGAGCCAAAGATTCGAAACTCTAGGCACTGTATATAGAAAAGAGTGATAGGATAAAGGAGTATACAGTATACACTGTAAAGTACTTGTGCAGCATTTACACAAGGAGCTTGCTAGGATCTCTTGCTACAAAGTCACTTTACTTAGCCAGCTTAATTCTTCTAGTCCTACCTAATTTGTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	148827	156529	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015969 guanosine tetraphosphate metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014415.1	PF13328.1	HD_4	153	310	6.30E-43
Glyur000237s00014415.1	PF04607.12	RelA_SpoT	379	495	2.00E-22
Glyur000237s00014415.1	PF02824.16	TGS	566	625	2.00E-18
Glyur000237s00014415.2	PF13328.1	HD_4	153	310	6.20E-43
Glyur000237s00014415.2	PF04607.12	RelA_SpoT	379	487	3.20E-20
Glyur000237s00014415.2	PF02824.16	TGS	558	617	2.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.449
SRR1783600	control	4.477
SRR1783602	moderate drought stress	6.431
SRR1811619	moderate drought stress	6.334

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.696
DRR006520	Root Summer glycyrrhizin high producing strain	12.747
DRR006521	Root Winter glycyrrhizin high producing strain	80.198
DRR006522	Root Winter glycyrrhizin high producing strain	77.469
DRR006523	Root Summer glycyrrhizin low producing strain	10.712
DRR006524	Root Summer glycyrrhizin low producing strain	10.539
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.640

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.031
SRR2868004	Drought Stress (root)	8.695
SRR2967015	Control (root)	11.549

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.718
SRR9715740	Leaf	70.491
SRR9715741	Leaf	46.977
SRR9715739	Root	0.805
SRR9715742	Root	4.819
SRR9715743	Root	4.853

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.658
SRR8749028	MeJA induced 9h	16.772
SRR8749029	MeJA induced 9h	9.700
SRR8749030	Uninduced	11.126
SRR8749031	Uninduced	10.460
SRR8749032	Uninduced	8.947

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.787
SRR8400027	Control - Root	8.880