Gene detail

Gene detail information of Glyur000237s00014413

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47520.1	1.00E-25	Integrase-type DNA-binding superfamily protein
NR	NP_001241446.1	7.23E-95	uncharacterized protein LOC100780763 [Glycine max]
Swissprot	tr\|O22259\|ERF71_ARATH	2.00E-37	Ethylene-responsive transcription factor ERF071
trEMBL	tr\|C6TJ94\|C6TJ94_SOYBN	3.00E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G02080.1}

Sequence

Transcript Sequence

>Glyur000237s00014413.1
CTAGAGTCTATAATCATAAAGATTAGAGATGCCTAGCACGCGTGGACTGGCAAAAGCAAATTTTGATTTTTTTTGAGCAAATTGTAAGAGACAGGGTTGGTACACGTANGAAGTTTCCCCAATGGATTCCTAGGATCAATAACTAACTGTGCATACAATGTCTATCTGTCACGTGACGCACTGTATCCCCCACCTCGCCCTTATTTTTTCACCAGCTACAAAAGACCTCTTACCCTCCCATTTTTTTCATTCACGTCCTCCAACTCCTCTCCCCTTAAATCCCTTCCAAACAAAAACTTTCTGATAGTGATTTCACTATCTCTCTCCCCACTCCCATCCAGTGATTTTAGTTACATATAATACAATCAATATATCCTTTTCTTATATCTTACTAATTAGCAGCATGTGTGGCGGTGCCATCATCGCTGATTTCATCCCTCGCCACGGTTCTCGCCGCCTCATTGCTTCAGAACTGTGGCCCAACACATTTGGCAAGCACAANAGTGAATTGCAGCTCGACAATTGTTCTCATCCTCCTCAGCATCAACAATCATCAGCCCCTCTCAAAAGGCCCCAACTACCTTCCTCAGGGATAAGGCAGCGACCATGGGGCAAATGGGCCGCGGAGATTCGTGATCCGAGGAAAGGGGTTCGGGTCTGGCTAGGTACTTTCAACACTGCTGAAGAAGCTGCAAGGGCCTATGACAGAGAAGCTCGAAAGATCCGTGGCAAGAAAGCCAAAGTCAACTTCCCAAACGAGGATGACCAGTTTTCCACCACTCAACCTCGTGCAAATCTCCCTCCCCTGTATCAACAACAACAATACGGTTGCGTCCCCAAAAGTCTGAATTTGGAGTTTGGTTATGATCTGAACCAAGAAGGGGATGCAGGTGCTATTGGTTCCGTTGAGGAGAATAGTGGGTATGGAGCTGCATCGGGGTCAGAGGGTGCTTACTCCACAACGGTTGGGAATAATAGTGAAGAGAGAGAGAACCAAGTGGAGAAGCTTTCGGAGGAGCTGATGGCGTACGAGAACTACATGGGATTTTACCAGATTCCTTACTATGATGCCCAATCGGCTTCTGCTGCGCCCAATGGCAATAATGTTCAGGAAAGTGTGGTTGGGGATCTATGGACCTTCGATGCTGAGGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	140921	142305	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014413.1	PF00847.15	AP2	62	109	8.60E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.498
SRR1783600	control	1.482
SRR1783602	moderate drought stress	0.898
SRR1811619	moderate drought stress	0.865

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.726
DRR006520	Root Summer glycyrrhizin high producing strain	10.716
DRR006521	Root Winter glycyrrhizin high producing strain	395.067
DRR006522	Root Winter glycyrrhizin high producing strain	390.605
DRR006523	Root Summer glycyrrhizin low producing strain	113.144
DRR006524	Root Summer glycyrrhizin low producing strain	111.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.373
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.493

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.474
SRR2868004	Drought Stress (root)	2.410
SRR2967015	Control (root)	4.646

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.477
SRR9715740	Leaf	0.158
SRR9715741	Leaf	0.184
SRR9715739	Root	32.559
SRR9715742	Root	24.551
SRR9715743	Root	24.597

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1098.728
SRR8749028	MeJA induced 9h	1283.391
SRR8749029	MeJA induced 9h	1261.386
SRR8749030	Uninduced	963.867
SRR8749031	Uninduced	717.364
SRR8749032	Uninduced	1721.248

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.595
SRR8400027	Control - Root	15.073