Gene detail

Gene detail information of Glyur000237s00014409.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62660.1	4.00E-144	galacturonosyltransferase-like 7
NR	XP_004494402.1	0	PREDICTED: probable galacturonosyltransferase-like 7-like isoform X1 [Cicer arietinum]
COG	YP_007062961.1	2.00E-17	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q8VYF4\|GATL7_ARATH	0	Probable galacturonosyltransferase-like 7
trEMBL	tr\|A0A067HGL2\|A0A067HGL2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO87086.1}

Sequence

Transcript Sequence

>Glyur000237s00014409.1
ATGTTGTGGATTATGAAATTGTCGTGGTTTTTCTCCGCCGCAATGTTGGTGATTCTTCTCTCCCCCTCCCTCCAATCGTTCCACCCCGCCGAAGCTATTCGATCCTACTCCAACAACCTCCACGTGCCCCTCCACTACCGCAAAGCCCCTTCCTTCCGCAATGCAGATGAATGTGACTGGATTTCAGGGGAAATCAGCGTGTGTGACCCTTCCTTGGTCCACGTGGCCNTAACCCTCGACCTCGATTACCTTCGCGGTTCCATCGCCGCCGTTCACTCCATCCTCCAACACGCACACTGTCCCGANAGCATCTTNTTCCACTTCCTCGTCTCAGACACCAACCTGGAGTACCTAGTCCAATCCATCTTCCCACAGTTGAAGTTCAAGGTGTATTACTTCGACCCCAGCATCGTGAAGAACCTGATCTCAACCTCTGTGAGGCAAGCGCTGGAGCAGCCACTCAATTACGCAAGGAACTACCTCGCGGAACTCTTGGAGAGTTGCGTCCACAGGGTGATTTATTTGGATTCTGATTTAGTCGTGGTGGACGATGTGAACAAGCTTTGGGGAACCGGGTTGGGTTCACGGGTAATNGGGGCTCCGGAATACTGCCACGCAAACTTCACAAAGTATTTCACGGCGGGGTTCTGGTCGGAGCCGCGGTTCTCCGGCACGTTCGCGAAGAGGGGGAAGAAGGCGTGTTACTTTAACACGGGGGTGATGGTGATGGATCTGGTGAGGTGGAGGGAGGGAGGGTACACGAAGAGGATAGAGAGGTGGATGGAGATACAGAAGAGCGAGAGGATCTATGAGTTGGGGTCTCTGCCGCCGTTCCTGTTGGTTTTCGCTGGACACGTGGCGCCCATTGAGCACCGGTGGAACCAGCACGGCTTGGGAGGGGACAACGTTAGGGGTAGCTGCCGTGAGCTCCACCCTGGTCCGGTTAGCTTGCTGCATTGGTCCGGTAGTGGTAAGCCATGGGTTCGGCTCGATTCCAAACGCCCCTGCCCTCTCGATGCCCTATGGGCACCCTTTGACTTTGTTCTGGCTGCTATCTGCCAAGAGTTAAATAAGCCAAAGGAGGAAGACACGTGTGTTGGTATTTGGTGGTGGATAGCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	125962	127738	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014409.1	PF01501.15	Glyco_transf_8	74	330	1.70E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.730
SRR1783600	control	16.071
SRR1783602	moderate drought stress	10.567
SRR1811619	moderate drought stress	10.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.770
DRR006520	Root Summer glycyrrhizin high producing strain	14.921
DRR006521	Root Winter glycyrrhizin high producing strain	35.251
DRR006522	Root Winter glycyrrhizin high producing strain	34.454
DRR006523	Root Summer glycyrrhizin low producing strain	13.615
DRR006524	Root Summer glycyrrhizin low producing strain	12.994
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.826
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.477

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.233
SRR2868004	Drought Stress (root)	25.384
SRR2967015	Control (root)	28.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.896
SRR9715740	Leaf	4.638
SRR9715741	Leaf	5.066
SRR9715739	Root	47.553
SRR9715742	Root	28.241
SRR9715743	Root	30.235

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.820
SRR8749028	MeJA induced 9h	19.267
SRR8749029	MeJA induced 9h	16.092
SRR8749030	Uninduced	8.379
SRR8749031	Uninduced	5.310
SRR8749032	Uninduced	4.866

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.315
SRR8400027	Control - Root	41.410