Gene detail

Gene detail information of Glyur000237s00014408

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02730.1	0	cellulose synthase-like D5
NR	XP_007051035.1	0	Cellulose synthase-like D5 [Theobroma cacao]
COG	YP_007129238.1	1.00E-15	glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9SRW9\|CSLD5_ARATH	0	Cellulose synthase-like protein D5
trEMBL	tr\|A0A061DS29\|A0A061DS29_THECC	0	Cellulose synthase-like D5 {ECO:0000313\|EMBL:EOX95192.1}

Sequence

Transcript Sequence

>Glyur000237s00014408.1
GGTTAATCAAAAAAAAAATGAAAATGACACACATCAAGTCAACAACTTGTGCTTAAACAAAAGATAGAGAGATGAGGTTGCTACACCCAACAGGTCATTGGGCCGTTTATAGAGTTGAAACTCCTATAGCTATTGTTGACTTCTCTCAAACGGAACGTTTAGATTAGAAAAGCGAATAAAAGTAGATCAGCGGTCCAGATCTATCGACCGTTAACATTTAAATCCCAACGCAAAAAGACCCTTTTCCTTCATATTCAAATTCGACCGTTGCCCATATCCCAATCTACTTTTCCTTCCTCTTCTTCTTCTTCCTCCTCCTACTCGCTTCACTTCCTAAATATGGGCCATTGAAGAATCTTGTTTTTTTCTCTCTACTACTACACCTTACCTTAACCGTACTCTCTCTGTGATTCTTTATTCTTTTTTGTAAACATGGTGAAAACGGCCTCATCTCCGTCTTCTTCCTCTCCGGTGACGATAACAGTCTCTTCCGGGGGCAAAACAGGAGGGAGCAGAAGCATGGGTCTAACAAGTCCCGTTCCACGCGCTTCCGTCTCCAACAACCCCAATTCCCCTCTGAGTTCCAGATCAAACAGAGCTTCCGGTGGCGGAAGAAGGGTATCAGGTGGAGGAGGAGGCAACTATAGCAGCTCCATGTCCAAAGAAAACGACATGGAAGAAGAAACCAACACTGAATACGTAACATACACCGTTCACATTCCTCCAACACCAGACCGAAAACCCCTTTCAGCCTCAGAGACGAGCCTCCCCGAAGAAGATGGAAGCAAGAACAACAACAACAGTTACATATCGGGCACAATTTTCACCGGTGGCTTCAACTCTGTTACCCGAGGACACGTCATCGAATGCTCCACGGAGAAGCCGCCGCTGAAACCTGGTGGGTTGGTTTGTGGAATGAAAGGGTGTGATGAGGAAGCAATTAAAGGTCCATGCGAGTGTGGGTTCAAGATTTGCAGGGACTGTTACACAGAGTGTTATGGAAATAATAATGGAGGTGGTGGTGGTANGTGCCCTGGTTGCAAAGAACCTTACAACAATGTGACCGATGGTGAAGAAGAAGAGGTTTCCGAGGGTGAAGATCAGGCTTTGCCTTTACCTTCCATGGCTGACTTCAAGTTGGACAAGAGGCTTTCTCTTGTGAAATCCTTCAAAGCACAGAACCATCCACCTGATTTCGANCACACTCGCTGGCTTTTTGAAACTAAAGGAACCTATGGCTATGGAAATGCTGTGTGGCCTAAAGATGGATATGGTGCTAATGGGTTTGAACCACCTCCTGACTTTGGAGAGAAAGCTAGAAGACCTTTGACCCGTAAGGTTGGGGTTTCAGCTGCCATTCTCAGTCCATATAGATTACTTATTCTTATGCGTCTTGCTGCACTCGGGTTGTTTCTTACGTGGAGGGTTCGACACCCGAACCGTGAGGCAATGTGGCTGTGGGGAATGTCAATAACTTGTGAGCTATGGTTTGCATTCTCGTGGATTCTTGATCAGCTCCCTAAGCTGTGTCCTGTGAATAGGGTAACTGATCTGTCTGTTCTGAAGGAGAGGTTTGAGTCACCGAACCTCCGAAACCCGAAAGGGAGGTCTGATCTACCCGGAATTGATGTCTTTGTTTCCACGGCAGACCCTGAAAAGGAGCCACCTCTTGTCACGGCAAACACCATTCTCTCTATCCTCGCGGTTGATTATCCTGTGGAGAAGGTTGCGTGCTACCTTTCTGATGACGGTGGTGCTCTTTTGACATTTGAGGCCCTTGCTGAGACTGCTAGCTTTGCAAGAGTTTGGGTTCCTTTCTGCAGAAAGCACAAGATAGAGCCCAGGAATCCAGAGGCTTATTTTGGGCAGAAGCGTGATTTTCTCAAGAACAAGGTCCGGTTAGACTTTGTGAGGGAGAGGAGAAGGGTGAAGAGGGAATATGATGAATTCAAAGTGAGGATAAATTCCTTACCCGAATCCATAAGGAGAAGATCCGATGCTTACAATGCTCATGAGGAGTTAAGGGCCAAGAAGAAACAGATGGAAACTGGTTCCAATGTCTCCGAACCCATTAAGGTTCCTAAAGCAACATGGATGTCTGATGGTTCTCATTGGCCAGGAACTTGGGCATCAGCAGAAACGGAGCACTCAAGAGGGGACCATGCTGGTATAATTCAGGCAATGTTGGCTCCACCAAATGCAGAACCAGAATATGGTTCAGAAGCTGATGGGGAGAATTTGATTGACACAACAGATGTTGATGTTAGGTTGCCCATGCTTGTTTATGTGTCGCGTGAGAAGAGGCCGGGATATGATCACAACAAGAAAGCAGGAGCCATGAATGCTCTTGTTCGAACTAGCGCCATCATGTCCAATGGACCATTCATTCTGAATCTTGACTGTGACCATTACATCTACAACTCCTTGGCCCTCAGGGAAGGTATGTGCTTTATGCTTGACAGGGGTGGTGANAGGATATGCTATGTTCAGTTCCCTCAAAGGTTTGAGGGCATTGACCCCAGCGACCGTTATGCAAACCACAACACAGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCCTACAGGGTCCAATGTATGTGGGAACAGGTTGCATATTCAGAAGAACAGCTCTTTATGGTTTTAGTCCTCCCAGAGCTACTGAACATCATGGGTGGTTTGGAAGGAGGAAATTAAAGTTGCTCCTGAGAAAGCCCAAGGTGTCAAAAAAGGAAGAAGATGAAGTAGCTGTGCCAATCAATGGTGATCACAATGATGATGATGCAGATATAGAGTCCTTGCTCCTTCCCAGAAGGTTTGGGAATTCTACTTCGCTNGCTGCATCAATTCCTGTAGCAGAATATCAGGGAAGGTTGCTTCAAGATTTGCAAGGAAAAGGAACACATGGAAGGCCAGCAGGCTCTCTCGCCGTGCCTCGCGAACCATTGGATGCTGCTACTGTTGCAGAGGCAATAAGTGTCATATCTTGNTTCTATGAGGATAGAACTGAGTGGGGCAGAAGAGTGGGGTGGATATATGGTTCAGTTACAGAAGACGTGGTGACCGGTTACAGAATGCACAATAGAGGGTGGAGATCCGTGTACTGTGTGACCAAAAGAGATGCTTTTAGAGGAACAGCTCCAATCAATTTGACAGACAGGCTCCATCAAGTGCTTCGATGGGCGACCGGATCTGTTGAAATCTTCTTCTCAAGGAACAACGCGTTATTGGCAAGTCCTAGGATGAAGTTCTTGCAGAGGGTGGCCTATTTCAATGTGGGAATGTACCCTTTCACTTCAATGTTTCTGATTGTCTATTGCTTCCTGCCTGCAATCTCCNTATTCTCAGGGCAGTTCATAGTCCAATCCCTCAGTGCAACTTTCCTGGTATTCTTGCTTGGCATCACAATCACGCTGTGCTTGCTCGCGCTACTCGAGATCAAGTGGTCAGGGATCACACTACATGATTGGTGGAGGAATGAACAGTTCTGGTTAATTGGTGGAACAAGTGCACATCCTGCTGCTGTTCTACAAGGGTTGTTGAAGGTCATAGCAGGAGTAGACATCTCATTCACACTGACCTCAAAGTCAGCCACTCCAGAAGATGGAGATGATGAGTTTGCTGACCTTTATGTTGTGAAGTGGAGCTTTCTAATGGTCCCTCCAATTACAATCATGATGGTGAACACGATTGCTATTGCNGTGGGAGTAGCAAGGACTTTGTATAGCCCATTTCCACAATGGAGCAGGCTCGTAGGAGGGGTGTTTTTCAGTTTCTGGGTCTTATGCCATCTTTACCCGTTTGCAAAAGGGCTCATGGGAAGGAGAGGAAAAGTTCCAACCATTGTGTATGTTTGGTCTGGATTACTCTCAATTATCATTTCTTTGCTTTGGGTGTACGTAAACCCTCCTTCTGGAAGACCACAAGATTACATGAATTTCCAGTTCCCTTANTTTGAGGAATGATGATGAAGTTCCCCTCTACTTCATCTTAGTTAGTAGTACTGTGCCAATCATGTGTATGCTTAAGTGTCTATGTTGTAATTGTTGGGAGTATATCTTACTTTCCTGTCATTCTTTCTGATTGTGTGTGGTCCAA

Protein Sequence

>Glyur000237s00014408.1
MVKTASSPSSSSPVTITVSSGGKTGGSRSMGLTSPVPRASVSNNPNSPLSSRSNRASGGGRRVSGGGGGNYSSSMSKENDMEEETNTEYVTYTVHIPPTPDRKPLSASETSLPEEDGSKNNNNSYISGTIFTGGFNSVTRGHVIECSTEKPPLKPGGLVCGMKGCDEEAIKGPCECGFKICRDCYTECYGNNNGGGGGXCPGCKEPYNNVTDGEEEEVSEGEDQALPLPSMADFKLDKRLSLVKSFKAQNHPPDFXHTRWLFETKGTYGYGNAVWPKDGYGANGFEPPPDFGEKARRPLTRKVGVSAAILSPYRLLILMRLAALGLFLTWRVRHPNREAMWLWGMSITCELWFAFSWILDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARVWVPFCRKHKIEPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMETGSNVSEPIKVPKATWMSDGSHWPGTWASAETEHSRGDHAGIIQAMLAPPNAEPEYGSEADGENLIDTTDVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGXRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGRRKLKLLLRKPKVSKKEEDEVAVPINGDHNDDDADIESLLLPRRFGNSTSLAASIPVAEYQGRLLQDLQGKGTHGRPAGSLAVPREPLDAATVAEAISVISXFYEDRTEWGRRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSMFLIVYCFLPAISXFSGQFIVQSLSATFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDEFADLYVVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSRLVGGVFFSFWVLCHLYPFAKGLMGRRGKVPTIVYVWSGLLSIIISLLWVYVNPPSGRPQDYMNFQFPXFEE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	118367	122710	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00770	E2.4.2.24	EC:2.4.2.24	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016760 cellulose synthase (UDP-forming) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014408.1	PF14570.1	zf-RING_4	164	208	3.10E-08
Glyur000237s00014408.1	PF03552.9	Cellulose_synt	398	1163	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.083
SRR1783600	control	3.095
SRR1783602	moderate drought stress	1.909
SRR1811619	moderate drought stress	1.944

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.841
DRR006520	Root Summer glycyrrhizin high producing strain	6.741
DRR006521	Root Winter glycyrrhizin high producing strain	3.957
DRR006522	Root Winter glycyrrhizin high producing strain	3.771
DRR006523	Root Summer glycyrrhizin low producing strain	1.723
DRR006524	Root Summer glycyrrhizin low producing strain	1.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.634
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.632

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.206
SRR2868004	Drought Stress (root)	8.221
SRR2967015	Control (root)	13.391

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.727
SRR9715740	Leaf	0.124
SRR9715741	Leaf	0.672
SRR9715739	Root	7.672
SRR9715742	Root	3.325
SRR9715743	Root	3.998

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.956
SRR8749028	MeJA induced 9h	7.195
SRR8749029	MeJA induced 9h	4.006
SRR8749030	Uninduced	0.246
SRR8749031	Uninduced	0.316
SRR8749032	Uninduced	0.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.720
SRR8400027	Control - Root	9.922