Gene detail

Gene detail information of Glyur000237s00014407

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05710.2	6.00E-117	syntaxin of plants 43
NR	XP_004494399.1	0	PREDICTED: syntaxin-43-like [Cicer arietinum]
Swissprot	tr\|Q9SUJ1\|SYP43_ARATH	2.00E-164	Syntaxin-43
trEMBL	tr\|C6TBP9\|C6TBP9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40160.1}

Sequence

Transcript Sequence

>Glyur000237s00014407.1
GTAAACNGTAAACCCCAAAACGTTTTAAGACTGTTGTGTCGTCGGTTGTTTCCAATTCGCAATTCCACGGCGTTTCTGAGAACCAAACCACCGAAACTAGACAAAAGAAATCGGAGAAACGAGAGAGTGATCACTTCCAAAAACTTGAATCCTTTTCAAATGGCGACGAGGAATCGAACTCTAGAGTTCAGGAAGCACAGAGACGCCGTGAAAAGCGTACGCGCTCCTCTGTCCTCATCCGCATCTGCTTCCGGTGGTCCCGTCATTGAAATGGTTAGCACTTCGCTTCTTCGCTCCAATAATCGANCTTCCTATGCTCCTCTCAGCACCGACGACCCAGGCCCAGGCACCTCAAGAGATGCATTTACTGTGGGCTTGCCACCATCTTGGGTGGATGATTCCGAAGAGATAGCTACAAATATACAGTGTGCTCGGGTTAAAATGGCCGAGTTAACCAAAGTTCATGCAAAGGCTTTAATGCCCTCCTTTGCTGATGGAAAAGATGATCAGCGCCAGATCGAGACTCTCACCCAGGAAATTACAGCTCTCCTCAGAAAGTCTGAAGTGAGGCTAAAAAGACTTTCCGCTGCTAGAGGATCTTCTGAGGATTCTAATGTCAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAAAACTTGTCAATGGACCTCCGGCGAAAGCAGTCATCATATTTGAAACGTTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAGCAAATTTGGATTGCAGGATGATGGATTCGATGATGTGGGTTTTAGTGAACAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGATCTCAGAGGAAAGAGAGAGAGAGATTGAACAGGTTGCTAAATCAGTCAACGAACTTGCTCAGCTCATGAAGGATCTCTCCGTCCTTGTGATTGACCAGGGAACAATCGTGGATAGAATTGACTACAACATTCAAAATGTTGCTACTTCCGTCGAGGAGGGATTTAAGCAGTTGCAGAAGGCAGAAAGAACGCAGAAAAAAGGAGGGATGGTTATGTGCGCAACAGTGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTCTTGATACTCAAGGAGATACTCTTCTAGTCATATTAAGTAAAAGCTTTACTTACCGACTAACATGAAAGCTAATTCACTTTCCCGTGTCAATGGGAATCAAATTGTCTTCTGTTTGAAGCAGTTATCATCAACACTTCAGGTATTGGAATTTGTTTTATTGAAGGGCCTTGGGTTTATTGAGTGGCAATTGGGGTGTGTGGGGGAAGAAGAGCAATGTACAGTACTGCTTCATGCAAATATATACCTATAAAATTTGTTGCAGGTGCTTGAGATTTAAGAAGAAAATTGTACACGATTTAACTTTACCGTATCATGTAAATAATGATTTTGAGCAAATTCACCTCTTGTAGACGCCTTTTTAAAAGAAGGTGATTGATAGACACAATTTNTTAGTCATATTCAAAGATAGATATTGGATTATTGAACAAAGTGGTAGGGCAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	113506	117747	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005484 SNAP receptor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014407.1	PF00804.20	Syntaxin	127	225	9.80E-13
Glyur000237s00014407.1	PF05739.14	SNARE	286	348	2.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.714
SRR1783600	control	9.816
SRR1783602	moderate drought stress	10.645
SRR1811619	moderate drought stress	10.712

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.930
DRR006520	Root Summer glycyrrhizin high producing strain	16.012
DRR006521	Root Winter glycyrrhizin high producing strain	16.747
DRR006522	Root Winter glycyrrhizin high producing strain	16.235
DRR006523	Root Summer glycyrrhizin low producing strain	24.550
DRR006524	Root Summer glycyrrhizin low producing strain	24.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.798
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.849

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.510
SRR2868004	Drought Stress (root)	14.699
SRR2967015	Control (root)	15.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.645
SRR9715740	Leaf	11.368
SRR9715741	Leaf	13.948
SRR9715739	Root	4.415
SRR9715742	Root	11.612
SRR9715743	Root	10.508

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.773
SRR8749028	MeJA induced 9h	40.075
SRR8749029	MeJA induced 9h	54.397
SRR8749030	Uninduced	40.799
SRR8749031	Uninduced	43.763
SRR8749032	Uninduced	28.743

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.283
SRR8400027	Control - Root	15.180