Gene detail

Gene detail information of Glyur000237s00014401

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
NR	AES82149.2	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]
Swissprot	tr\|O81635\|ATK4_ARATH	Kinesin-4
trEMBL	tr\|G7KSP8\|G7KSP8_MEDTR	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000237s00014401.1
ATCTGTTGTTGGTTGTGTTGTACTCGTACGAGTAGTAGTTTGTTTTTGTAGAGAGAAAATAACAGGGAAGAGAAAAAGCTAACAAGGAAAGAAATCTCAACAACACTCAATGGTGGCATGACCAAACATAATATCTGAAGAGAGAAAAACCATCACACGCTTTTATTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTGCAAAATCCAGCTTAATTTTTCTCATGGATGAGACTGTGCAATGTTGATCAAACAGCTTAGTCTCTGGTGAGGTGAAGAGGGAGTGAGGAGTGAGGGATTCTGTTTTGTCGAGTTATGGCATCAGAGGCGGCATTGTCGTTTTCTGTGGCATCGGTTGTGGAGGATGTGCTTCAACAACACGGTCCTCGCCTCAAAGATCTTGACTTGGCATCTAGGAAAGCAGAAGAAGCTGCATCCAGAAGATATGAAGCGGCAGGGTGGCTGAGAAAAATGGTTGGGGTTGTTGCGGCTAAAGATTTACCAGCAGAGCCATCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATTATCCTCTGCAACGTTATTAATAAGGTTCAATCTGGAGCTGTACCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCAGTGATCCCTGATGGGGCACCNTTATCTGCTTATCAGTATTTTGAAAACGTGAGGAATTTCCTTGTGGCTGTTCAAGAAATTGGACTTCCTACTTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCCAGGATTGTGAACTGCGTCTTGGCCCTTAAATCTTATAGTGAATGGAAACAGAATGGGGCAAATGGTGCGTGGAAATTTGGTGGAACTCTCAAACCCACCATCTCTGCTACTAAATCTTTTGTGAGGAAAAACTCAGAACCATTTACTAATTCCTTGTCAAGGACCTCATCAATCAATGAAAAAACTCTCACTACTCTTAACTCTGACGTTAAGTCTAATAATAAAATGTCCGGTTCCCATTCTTTGAGTGTGCTTGTTCGTTCAATCCTGTCAGATAAGAAACCAGAAGAAATTCCAATGTTGGTTGAATCTGTTTTGAATAAGGTTGTTGAGGAGTTTGAGCATCATATTGCAAGCCATGGTGAACAGACAAAAATAACTTCAAGAGATTGTGTTTCTGAAAGAAACGGATCTGTATCAAAGTTTGTTGCAGCAGACAAAAAGGTGGAGAACAAGATTCATATGGTAGTGAAGAAAGAGGATTGCATTCACAAAAATCGCGTGGCTGCTGAGGAATTGCAAAANCAGCNAATGCTCTTTGACCAACAGCAAAGAGATATTCGAGAGCTAAAGCTCACTCTTCACACCACAAAAGCTGGTATGCAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATCTTGGCATGCACATTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATATAATGAAGTCCAAGACCTTAAGGGAAGTATTAGGGTGTACTGTAGAGTAAGACCCTTTTTTCCTGGACAAGCAAACCACTTGAGCACAGTGGAGAATATAGAAGATGGAACCATCACAGTTAATATTCCTTCAAAGAATGGGAAGGGACNCAGATCCTTCAACTTCAACAAAGTCTTTGGACCATCTGCTACTCAAGCTGAGGTCTTCCTTGACATGCAGCCACTTATTAGATCTGTTCTTGATGGCTATAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACTTATACAATGACTGGACCAAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGCGATTTGTTTCTCATAGCAGATCAAAGAAAGGACACTTTCCACTATGACGTTTCTGTTCAAATGATTGAGATTTATAATGAACAAGTCAGGGATCTACTTGTCACTGATGGAACAAACAAAAGATATCCTTTTACCAGTTATTTGATTCTCTTTTGGAAAAAGGTTATNACTGCTTATATAATGGAACATAGTAGTTCTCACAAAGGACTCAGTGTGCCAGATGCAAGCCTTGTCCCCGTGTCATCAACTATTGATGTTATTGAACTAATGAACCTTGGGCAAAGGAACCGTGCGGTTGGTGCAACAGCCCTTAATGACCGCAGTAGCCGATCTCATAGTTGCTTGACCGTTCATGTTCAAGGAAGAGATTTGACATCTGGAGCTATCCTTCGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGGGTGGATAAGTCTGAGGCCACAGGAGATAGACTAAAAGAGGCACAACATATTAACAAATCTCTTTCAGCTTTGGGCGATGTCATTGCTTCCCTTGCTCAGAAAAATTCACACGTTCCTTATAGAAACAGTAAACTCACACAGTTGCTCCAAGATTCACTTGGAGGACAGGCTAAGACACTAATGTTTGTTCACATAAGTCCAGAAAGTGATTCTGTTGGAGAAACAATTAGTACTTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTTGGTGCAGCTCGAGTAAACAAAGATGGTGCAGATGTTAAAGAGCTCAAAGAACAGNTCGCTAGCCTTAAGGCAGCACTGGCAAGAAAGGAAGGGGAATCAGAACATTCTTTATCCGGCAGCTCTAAAAAATACAGGACAAAAGCTACTGANCTATCATCCCCTTATCATATGAACCAGCGGGTTGCAGACACCGGGGATCAGCTTGGAAGCCGGCNACCAATGGTTGAAGTTGGTAACATAGAGAGTAACACCATAATGAGGCACAAAACTCAGAGCTTTGACTTTGATGAGATATCAGCAAATTCACCACCCTGGCCCCCAGTGAGTAGTGTTGGACAAAACGATGGGGAGGATGACAAAGAAACAGGTTCTGGAGAGTGGGTTGATAAGGTGATGGTGAACAAAACTGAGAACCTCTTGGGGTGTTGGCAAACAGGCAATGGAAACTTATCAGAGGCCTTTTATCAAAAATATCTCCAAGATTCTTCCAAAATGTACTCAGAACAGTCCTATAACATGTTCATGGGAGGTAACCACATTGTGGGTTCAGATGACNTGGAGGAGCTTGATGCTGCAACCAGTGATTCCTCAGAACCTGACTTGCTTTGGCAATTTAATCATTCCAAACTCACCAGTATGACCAATGGAATTGGATCAAAGACTATGAGATCTGTCTCAAAGGCAGCAAAAAGCCCAGAACTTAGCAANAAGACTGTTGTTGGCCTTTCACCTTCGTTGAAACAATCAAATGGTGTCTCACATCGGACAGGAAGAAGTCCAGCTCCAATTGACGTGAAACGTAAAACTGGGAGTAGAAAGTAAAACATGTTATTCAAAACGTAAAGAGTGATTTTTTTTTATTTTTTTTTTCATTTTTCAATTTTTTTTGGCTGTAATCTCTCTCTCTCTCTGTGTCTTTTTTGGTTTGTAATTTTT

Protein Sequence

>Glyur000237s00014401.1
MASEAALSFSVASVVEDVLQQHGPRLKDLDLASRKAEEAASRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSAVIPDGAPLSAYQYFENVRNFLVAVQEIGLPTFEASDLEQGGKSSRIVNCVLALKSYSEWKQNGANGAWKFGGTLKPTISATKSFVRKNSEPFTNSLSRTSSINEKTLTTLNSDVKSNNKMSGSHSLSVLVRSILSDKKPEEIPMLVESVLNKVVEEFEHHIASHGEQTKITSRDCVSERNGSVSKFVAADKKVENKIHMVVKKEDCIHKNRVAAEELQXQXMLFDQQQRDIRELKLTLHTTKAGMQFMQMKFHEEFSNLGMHIHGLAHAASGYHRVLEENRKLYNEVQDLKGSIRVYCRVRPFFPGQANHLSTVENIEDGTITVNIPSKNGKGXRSFNFNKVFGPSATQAEVFLDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLIADQRKDTFHYDVSVQMIEIYNEQVRDLLVTDGTNKRYPFTSYLILFWKKVXTAYIMEHSSSHKGLSVPDASLVPVSSTIDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDSVGETISTLKFAERVATVELGAARVNKDGADVKELKEQXASLKAALARKEGESEHSLSGSSKKYRTKATXLSSPYHMNQRVADTGDQLGSRXPMVEVGNIESNTIMRHKTQSFDFDEISANSPPWPPVSSVGQNDGEDDKETGSGEWVDKVMVNKTENLLGCWQTGNGNLSEAFYQKYLQDSSKMYSEQSYNMFMGGNHIVGSDDXEELDAATSDSSEPDLLWQFNHSKLTSMTNGIGSKTMRSVSKAAKSPELSXKTVVGLSPSLKQSNGVSHRTGRSPAPIDVKRKTGSRK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	74970	80673	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014401.1	PF00307.26	CH	48	160	5.80E-08
Glyur000237s00014401.1	PF00225.18	Kinesin	403	739	1.70E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.814
SRR1783600	control	4.929
SRR1783602	moderate drought stress	2.451
SRR1811619	moderate drought stress	2.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.625
DRR006520	Root Summer glycyrrhizin high producing strain	11.361
DRR006521	Root Winter glycyrrhizin high producing strain	0.534
DRR006522	Root Winter glycyrrhizin high producing strain	0.655
DRR006523	Root Summer glycyrrhizin low producing strain	6.429
DRR006524	Root Summer glycyrrhizin low producing strain	6.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.581
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.588

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.778
SRR2868004	Drought Stress (root)	18.398
SRR2967015	Control (root)	26.480

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.636
SRR9715740	Leaf	0.587
SRR9715741	Leaf	1.116
SRR9715739	Root	0.481
SRR9715742	Root	5.649
SRR9715743	Root	4.521

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.612
SRR8749028	MeJA induced 9h	1.921
SRR8749029	MeJA induced 9h	1.871
SRR8749030	Uninduced	0.497
SRR8749031	Uninduced	0.132
SRR8749032	Uninduced	0.362

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.539
SRR8400027	Control - Root	20.348