Gene detail

Gene detail information of Glyur000237s00014399

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16850.1	3.00E-152	Pectin lyase-like superfamily protein
NR	XP_006604728.1	0	PREDICTED: probable polygalacturonase-like [Glycine max]
COG	YP_001179193.1	3.00E-54	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	4.00E-138	Probable polygalacturonase
trEMBL	tr\|K7MZJ3\|K7MZJ3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40100.2}

Sequence

Transcript Sequence

>Glyur000237s00014399.1
ATGGCGGCGGCCAGGCGGAGGCAATTTAAGAGTTTAGAGATTGATGACTACGCTAAGGTGGCAGTGCTTTTACTTGTAGCATTAAGTACTGCTCTGAAAAGCAATGGAGAAGATAGCAGTGGACCATGTAAACAGAAAGCATTGGATGCTAGGCCTCACAGTGTGTCGATTTTGGAGTTTGGGGCCGTTCGAGATGGAATAACGCTGAACACAGTTGCATTCAAGAATGCAATATTTTATCTGAAGTCATTTGCTGACAAAGGTGGTGCTCAGCTATATGTTCCATCTGGCAGATGGCTTACTGGAAGTTTCAACCTTACCAGCCACCTCACTTTGTTCCTTGAAAGAGGCGCTACCATCATTGCATCCCAGGATTATGCCCATTGGGATGTAGTGGATTCCCTTCCTTCTTATGGTAGAGGAATTGACGTTCCAGGTGGGAGGTATCGCAGCTTGATCTATGGACAGAATTTAAGTGATGTGGTGATTACAGGTGATAACGGAACGATTGATGGCCAAGGCTCTATCTGGTGGGACCTGTTCAATTCTGATTCCTTGAATTACGGTCGACCACATCTTGTGGAATTTGTTGGTTCTGTTGATGTTATTATTTCCAATTTGACATTTTTAAACCCTCCAGCTTGGGACATCCACTCAGTATACTGCAGTAACGTTCAAATTCAGAACATAACTGCTCGCGCACCAGCTGAATCCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTCATCATGTTTGCATTGAAAACAGTAACATTAGCACTGGTTATGATGCAATTGTGCTGAAGAGTGGTTGGGACCAATATGGAATTGCCTGTGGAAAACCAACCTCNAGTGTCCACATCAGGAATGTTAACCTACAATCATCGTCAGGCGCTGGCCTAGCATTTGGGAATGAGATGTCTGGTGGCATATCTGATATAACTGCAGAGCAACTTCATATACACAACTCGCGTATTGGCATTGAGCTGAAGACAACTAGGGGTAGAGGTGGATATATGAAAGACATCTTCATTTCTGATGCAGAATTGGAAAACATTGACTTGGCTATCAGCATGACAGGATACTCCGGTTTCCATCCAGATGACAAGTATGATGCAAGTGCACTTCCAGCTGTTGGTAGCATTGCTTTTGAGAATCTGATTGGTGCAAATGTTAATGTTGCTGGGAATTTTTCAGGAATAGTTGATTCACNATTCACCACAATCTGTCTTTCAAATGTGACTTTTTCTGTCCATTCCAGGCCATCCCCTCCATGGTTCTGTTCTAATGTAATGGGTTTCTCCGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTCCAGAGCTCATATTCAAACTTTTCATTTTCTTGTTTTTCTTCCATATATCCACCCTTTACTAATGTCTCGACCTTATTTGATCTTCATCCACGAGAATTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	66161	69829	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014399.1	PF00295.12	Glyco_hydro_28	153	364	1.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.299
SRR1783600	control	0.298
SRR1783602	moderate drought stress	0.648
SRR1811619	moderate drought stress	0.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.276
DRR006520	Root Summer glycyrrhizin high producing strain	1.119
DRR006521	Root Winter glycyrrhizin high producing strain	1.294
DRR006522	Root Winter glycyrrhizin high producing strain	1.169
DRR006523	Root Summer glycyrrhizin low producing strain	2.889
DRR006524	Root Summer glycyrrhizin low producing strain	2.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.128
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.186

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.182
SRR2868004	Drought Stress (root)	1.856
SRR2967015	Control (root)	1.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.118
SRR9715740	Leaf	0.261
SRR9715741	Leaf	0.489
SRR9715739	Root	0.353
SRR9715742	Root	0.473
SRR9715743	Root	0.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.476
SRR8749028	MeJA induced 9h	13.395
SRR8749029	MeJA induced 9h	16.755
SRR8749030	Uninduced	22.256
SRR8749031	Uninduced	16.672
SRR8749032	Uninduced	11.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.021
SRR8400027	Control - Root	1.281