Gene detail

Gene detail information of Glyur000237s00014395

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40940.1	1.00E-178	ethylene response sensor 1
NR	AES82151.2	0	ethylene receptor [Medicago truncatula]
COG	YP_007133186.1	1.00E-35	GAF sensor hybrid histidine kinase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q9ZWL6\|ETR1_PASED	0	Ethylene receptor
trEMBL	tr\|G7KSQ0\|G7KSQ0_MEDTR	0	Ethylene receptor {ECO:0000313\|EMBL:AES82151.2}

Sequence

Transcript Sequence

>Glyur000237s00014395.1
ATGATGGAGTCCTGCGAGTGTATAGACACACAAAAAAAAACAGATGAACTTCTTGTCAAGTATCAGTATATCTCGGATGTTCTGATTGCGCTTGCATATTTCTCAATTCCTGTGGAACTCATCTATTTTGTTCAGAAATCTGCTTTCTTCCCAAAAAAAAAAGTTCTCATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCAGCCCACTCCAAAGCAGTTGCTGTCGTGATGACAATTGCCAAAAAAAAAAATGCTATTGTGTCGTGCGCAACCGCACTGATGCTTGTCCACATTATTCCTGATCTGTTGAGTGTCAAAACCCGTGAGTTGTTCCTTAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGGCTTATTCTGACTCAAGAAGAAACCGGAAGGCATGTGAGAATGTTGACTCATGAAATAAGGAGCACACTTGACAGGCATACCATTCTAAAGACTACTCTTGTGGAGCTGGGTAGAAAAAAAAAATTGGAGGAATGTGCATTGTGGATGCCATCAAGAAGTGGTCTGAATTTGCAACTTTCCCATACATTAACCTACCATGTACAAGTTGGGTCTACTGTGCCAACAAACCTTCCCATAAAAAAAAAAGTTTTCAGTAACCCTCGAGCTACACGTATACCGCACACCTGTCCACTGGCCAGGATTAGACCTCTCGTGGGAAGATATGTGCCACCTGAAGTTGTAGCCGTTCGGGTGCCCCAAAAAAAAATGTCAAATTTCCAAATTAATGATTGGCCTGAGCTTTCGGCAAAAAGCTATGCAATCATGGTTCTCATTCTCCCTACTGATAGTGCTAGAAAGTGGCGAGACCATGAGTTGGAAAAAAAAAAAGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGGGATCAACTCATGGAGCAGAATGTTGCTTTAGATTTAGCTCGGCGAGAGGCGGAAATGAAAAAAAAAGCTCGCAATGATTTCCTTGCTGTCATGAATCATGAAATGAGGACGCCAATGCAAAAAAAAATAGCATTGTCATCACTTCTTTTGGAGACTGAACTGACTCCAGAGCAGAGGGTAAAAAAAAAGACAGTATTGAAGAGTAGTAATGTTTTGGCAACGCTTATCAATGATGTTCTTGATCTTTCTCGACTAGAAGATGGTAGCCTTGAACTAGAATTGGGAAAAATCAACCTTCATGAAAAAAAAAGAGAGGTTAAGGATTCTGGGTGTGGCATTCTCCCGCAAGACATAAAAAAAAACTTTACCAAGTTTACTCAGTCTCAGAGTGGACCGATTCGATCTAGCAGTGGTGCAGGTCTTGGGTTAGCCATTTGTAGAAGATTTGTAAATCTCATGGAAAAAAAAATATGGATTGAGAGCGAGGGCCTTGATAAAGGAAGCACGGCTACATTCATAGTAAAAAAAAAGATCTGTGGCAATCCAGATTCATCTGATCATAAAGCTGCAAACAGAGGCCAAGCATATAGTGGAAGTGGAGGCCTTGCTAGATTTAAACCCTTTGTCAAAGATGACGACGACACAGGTTTTTCTAATCGACGCAATCAAAGAAGTTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00237	51419	55086	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14509	ETR, ERS	EC:2.7.13.-	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0007165 signal transduction

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000237s00014395.1	PF01590.21	GAF	159	308	3.10E-06
Glyur000237s00014395.1	PF00512.20	HisKA	345	409	1.80E-12
Glyur000237s00014395.1	PF02518.21	HATPase_c	424	496	5.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.929
SRR1783600	control	9.431
SRR1783602	moderate drought stress	19.449
SRR1811619	moderate drought stress	19.630

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.953
DRR006520	Root Summer glycyrrhizin high producing strain	11.406
DRR006521	Root Winter glycyrrhizin high producing strain	15.986
DRR006522	Root Winter glycyrrhizin high producing strain	15.402
DRR006523	Root Summer glycyrrhizin low producing strain	19.955
DRR006524	Root Summer glycyrrhizin low producing strain	21.392
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.029

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.401
SRR2868004	Drought Stress (root)	6.597
SRR2967015	Control (root)	6.414

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.743
SRR9715740	Leaf	3.309
SRR9715741	Leaf	4.730
SRR9715739	Root	4.616
SRR9715742	Root	7.464
SRR9715743	Root	6.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.706
SRR8749028	MeJA induced 9h	5.991
SRR8749029	MeJA induced 9h	2.881
SRR8749030	Uninduced	5.681
SRR8749031	Uninduced	5.444
SRR8749032	Uninduced	6.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.673
SRR8400027	Control - Root	11.617