Gene detail

Gene detail information of Glyur000236s00014255

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47490.1	2.00E-118	RNA-binding protein 47C
NR	KHN22302.1	0	Polyadenylate-binding protein RBP47C [Glycine soja]
COG	YP_003267833.1	9.00E-12	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SX79\|RB47C_ARATH	4.00E-178	Polyadenylate-binding protein RBP47C
trEMBL	tr\|V7ASP6\|V7ASP6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08657.1}

Sequence

Transcript Sequence

>Glyur000236s00014255.1
GAAAGAGGTGGCGGCGGATCCTGGAGAGAGAGAGGGGAAGGGGAAGTACAACTTGATAACAGTGTTATGCATATCCCTAATTAAAGATCCAACGGTTAAGATCGAATCCCATAGTCTAATCCAACGGTAAAAACGGCAACCGCGTTCACGAAGCCAACCCAAGATACCCTCATCATAAATCATCCTCTTAGACCCTTGCCGCGACCTCTCTTTCACTCTCTCTGAAAAAAAAATCCAGATTCAACCCCTCTCTCATTCTCTCTCTCTCTACCAAAACCAACTTGCCTCTATTTGTTCTNTCTGTTTTTTTTTTTAATTCTTCGTTTTCGCTTTCTCTATCTGAATCTCTCATATTAATTAATTTCCAGAAGGAAAACAGAGAGAGACAGAGGCAACGTGATAATTAGACATTAGAGAAGATGCAATCATCAAACGGCTCTGATTCGCAACCGACGGAGCAGCAGAACCAGCAACAACGGCAACAGCAAACGCCGCCGCAGCCGGTGGCACTGCCTCAACAGTGGGTGCCGATGCAATACCCAGCGGCGGCCATGGTAATGCAGCACCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCACCGCAGTCCTATATGCCTTACCACCACCAGTACCAGCAGCAAGTCCCGCACGTGCCACACGCGCATCAGGGATCCAGCGCCGAGAATAAAACGATCTGGGTCGGCGATTTGCACCATTGGATGGACGAAAACTATCTCCACCGCTGTTTCGCTTCCACTGGCGAGATATCCTCCATTAAGGTGATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTCGAATTCTATTCACATGGCACAGCTGAGAAAGTTTTACAGAATTATGCTGGGATTTTGATGCCTAACACAGAGCAACCTTTTCGCCTTAACTGGGCAACATTTAGCACTGGAGACAAACGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACATTTTCTAATAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGATAATGAGAGATCTCAGGCTATGACTGAAATGAACGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCGTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGNTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCAATTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATCATGCTGAAGAGGCGTTGCAGAAGCTAAATGGTACAAAAATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAGTCCGTGGACCGGGGCGTATTATGGGGGACCTGTTTATGATGGTTATGGATATGCTATGCCGCATCCTCATGACCCAAGCATGTATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACACCAACAACAAGTAAGCTGAATGAAGTGCAGTGCAGGAGTATACTCACAACAGCATCGTGCTTGAATGAGCAAATTAACTTCTATCCCTTGTAACTTGCTCGATCTGTTGAGTTCTGAAGAATCCCTCCTAATTGTGGAGCGGAGTTGAATTTTGATACCCTCAGGTAGCGCTGTAGGAATTCAATTAATCATTCGTTTAGACTCGTAGGAGTAATGAGGAACTTAAACTTGTTTATTGGAATAATTATATCAAGTATGCCTGCATTAGCTCTTGCTTGCATTTTAATTGCTTTTGGCACTTGACATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	217914	221811	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014255.1	PF00076.17	RRM_1	93	160	8.60E-13
Glyur000236s00014255.1	PF00076.17	RRM_1	186	256	2.10E-15
Glyur000236s00014255.1	PF00076.17	RRM_1	291	354	9.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.537
SRR1783600	control	41.264
SRR1783602	moderate drought stress	45.063
SRR1811619	moderate drought stress	44.206

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.336
DRR006520	Root Summer glycyrrhizin high producing strain	43.794
DRR006521	Root Winter glycyrrhizin high producing strain	84.815
DRR006522	Root Winter glycyrrhizin high producing strain	83.123
DRR006523	Root Summer glycyrrhizin low producing strain	56.006
DRR006524	Root Summer glycyrrhizin low producing strain	56.331
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.045

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.793
SRR2868004	Drought Stress (root)	45.226
SRR2967015	Control (root)	41.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.412
SRR9715740	Leaf	33.392
SRR9715741	Leaf	57.690
SRR9715739	Root	18.252
SRR9715742	Root	38.024
SRR9715743	Root	35.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.767
SRR8749028	MeJA induced 9h	160.103
SRR8749029	MeJA induced 9h	173.683
SRR8749030	Uninduced	264.487
SRR8749031	Uninduced	253.757
SRR8749032	Uninduced	243.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.248
SRR8400027	Control - Root	47.331