Gene detail

Gene detail information of Glyur000236s00014254

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26540.1	5.00E-89	uroporphyrinogen-III synthase family protein
NR	XP_004501590.1	0	PREDICTED: uroporphyrinogen-III synthase, chloroplastic-like [Cicer arietinum]
COG	YP_004368530.1	6.00E-63	uroporphyrinogen-III synthase [Marinithermus hydrothermalis DSM 14884]
Swissprot	tr\|O48721\|HEM4_ARATH	1.00E-119	Uroporphyrinogen-III synthase, chloroplastic (Precursor)
trEMBL	tr\|G7J5U1\|G7J5U1_MEDTR	4.00E-172	Uroporphyrinogen III synthase {ECO:0000313\|EMBL:AES73257.1}

Sequence

Transcript Sequence

>Glyur000236s00014254.1
GCAATAGATGTGGTAACAGCTGGAGTGGGAAAAGTTTCTTCGCCCAACACGTTTCAATGGCCCAATTTTCTGTCTCCCCTCTCTGCTGTGCAACACCTTCTCGTCTTCCACTTCACCGGCAAATCTTTGTCGTTTCACAACGAAACTCTGCCGCTGCTTCCGCAACCGATCCCAACTCCACCTTCACTTCTTCCTCCACCTCCAATCTCACGCCCAGAGTCGTCGTCACCAGAGAACGTGGCAAGAACGCCAAGCTTATCGCTGCTCTGGCCAAACATGAAATCAATTGTTTGGAGCTTCCACTCATTGAGCACATGCGGGGACCTGATTTAGACAGGCTTCCTTGTGTATTAAGTGATAATGCATTTGATTGGATTGTCATAACTTCCCCTGAGGCAGGTTCAGTCTTTCTAGAGGCATGGAGAGCTGCTGCGATGCCTCATGTCAGAATANGCGTTGTTGGGTCTGGTACTGCAGGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCAATCACTTGATATTGCCTTTGCACCATCAAAAGCAACAGGAAAGGTTTTGGCTACAGAGCTCCCTAAGATTGGAAATAAATCCACCGTTCTATATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGGCTTTCAAGTCGTGGATTTGATGTTACTAGGATGAATACATATACAACGGTACCAGTTCAACATGTTGACCAGATGATTCTAAAGCAAGCACTTGCTGCCCCTGTTGTTACNGTAGCATCGCCATCTGCAATTCATGCCTGGAAAAATCTTCTTTCAGATTCCGACTGGAGCAATTCTGTTGCATGCATTGGTGAAACAACTGCTGCAATGGCAAGAAGATTAGGCTTCAGAAATGTGTACTACCCAACACAACCAGGCCTTGAAGGCTGGGTAGAAACCATTCTTGAGGCATTAGGATCCTATGATGAATTATTGAGGTAATCCTCTGCTCATCACAGCAACCTGGAGATGTTTCCAGCTGTTTCTTGATGCAGCATATTTGATTAATGTATTAAATTGACAGTATGGATGGATTTACTTNCTCTGTTCAGTAGTAGTTTTTGGACTGATGAGGCTATCATGAGATAGTAGTAAATAATTTCCATCATGTAAATACCATACTGCAAGTACTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	207235	213331	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01719	hemD, UROS	EC:4.2.1.75	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0033014 tetrapyrrole biosynthetic process

molecular_function
GO:0004852 uroporphyrinogen-III synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014254.1	PF02602.10	HEM4	66	288	5.80E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.992
SRR1783600	control	39.023
SRR1783602	moderate drought stress	46.427
SRR1811619	moderate drought stress	45.913

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.972
DRR006520	Root Summer glycyrrhizin high producing strain	16.664
DRR006521	Root Winter glycyrrhizin high producing strain	48.215
DRR006522	Root Winter glycyrrhizin high producing strain	47.280
DRR006523	Root Summer glycyrrhizin low producing strain	18.120
DRR006524	Root Summer glycyrrhizin low producing strain	17.522
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.923
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.858

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.061
SRR2868004	Drought Stress (root)	14.161
SRR2967015	Control (root)	13.590

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.255
SRR9715740	Leaf	28.899
SRR9715741	Leaf	22.767
SRR9715739	Root	19.741
SRR9715742	Root	16.606
SRR9715743	Root	19.068

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.463
SRR8749028	MeJA induced 9h	9.570
SRR8749029	MeJA induced 9h	11.288
SRR8749030	Uninduced	11.395
SRR8749031	Uninduced	7.971
SRR8749032	Uninduced	9.935

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.750
SRR8400027	Control - Root	55.090