Gene detail information of Glyur000236s00014245 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15780.1 | 4.00E-24 | Cupredoxin superfamily protein |
| NR | AFK44435.1 | 7.65E-79 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SVZ3|I3SVZ3_LOTJA | 3.00E-79 | Uncharacterized protein {ECO:0000313|EMBL:AFK44435.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00236 | 159962 | 160558 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000236s00014245.1 | PF02298.12 | Cu_bind_like | 42 | 123 | 0.00014 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.328 |
| SRR1783600 | control | 0.367 |
| SRR1783602 | moderate drought stress | 0.317 |
| SRR1811619 | moderate drought stress | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.799 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.556 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.378 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.961 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.225 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.162 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.043 |
| SRR2868004 | Drought Stress (root) | 16.753 |
| SRR2967015 | Control (root) | 1.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.151 |
| SRR9715740 | Leaf | 15.494 |
| SRR9715741 | Leaf | 8.835 |
| SRR9715739 | Root | 0.449 |
| SRR9715742 | Root | 1.394 |
| SRR9715743 | Root | 1.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.071 |
| SRR8749028 | MeJA induced 9h | 30.233 |
| SRR8749029 | MeJA induced 9h | 25.231 |
| SRR8749030 | Uninduced | 5.281 |
| SRR8749031 | Uninduced | 3.428 |
| SRR8749032 | Uninduced | 3.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.846 |
| SRR8400027 | Control - Root | 1.219 |