Gene detail

Gene detail information of Glyur000236s00014240

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66850.1	4.00E-118	mitogen-activated protein kinase kinase kinase 5
NR	XP_003602992.1	0	Mitogen-activated protein kinase kinase kinase [Medicago truncatula]
COG	YP_004223283.1	1.00E-27	serine/threonine protein kinase [Microbacterium testaceum StLB037]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1.00E-92	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|G7J5S7\|G7J5S7_MEDTR	0	MAP kinase {ECO:0000313\|EMBL:AES73243.1}

Sequence

Transcript Sequence

>Glyur000236s00014240.1
ATGAAACCTCCTTCGCCTAACCAGCAGCAGCCACAAGGCAACGTAGAATCGCTTCAGCAACGGAGGCTCACCAGACAGAGGCGGTTACGCTACCTGAGCGACCAAGACGCCGGTCTGCAGCATTCCACCGACGCTGCTTCCTCNTCTTCCCTACCGGCTTCTCCTCTGCGCTCTTTCTTCGTTTCTGGTTCCGACCACTGGTCTTCCTCTGCTGTCCCTCAACCGCTCCCGCTTCCTGAATTACGAAGAACTGGGGATCATGATGCGGTGAGAAGTTTGAGGTCTTCCAGCAATTTGGGTAGACCCTCTTTTGATGCGGTGACTGGAAATGCAAAATATGATTTGAGAGTGAATATTCCTTCTTGTAAAGGTCCCAGAGAACACTCCCATGATAATGACTCTGAAGGTATTTCCAACTTGAAATTGCATTTTGCTGCCAAGAGTGCCCCAACAAGCATATTCTCCAGTCCTGTTACTAGTCCACGCAGATCAAGCAATGCAGATTTATTTGATCCTTCCATCAGTTTTCTTCAAGACTTTAATGATATTTGCAGAGTGTTACCAGCTAAAACTGCTCATAGTCCAGACCGGTCTCCTCTTCGTAGCCTGGGAAACCAAAGTCCTAACCTCAACCCTAATAGTCAAGGGGGATCTCAGCACCCTAATTTTGGCTCCAGATTGTGGTCTGAAAAAATCAATGTTGATGCACATCCATTGCCCCTTCCACCGAGAGCTTCGCCACCAGCACAATCATCTGCACAGCATCAATCAAATATTATGCATCACACAACAGAAAATTCACTTTCAATGAATGGCCAATGGCAGAAAGGAAAACCTATTGGACGTGGATCATATGGAACTGTTTATCACGCAACAAACCTAGAGACTGGAGCCTCGTGTGCAATGAAAGAGGTGGATCTGTTTCCTGATGATCCTAAATCTGCCGACTGCATAAAGCAACTAGAGCAGGAAATCAGAATTCTCGGTCAGCTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATAGATTGTACATATATATGGAATATGTTCATCCTGGATCACTTCATAAGTTTATGCATGAACATTGTGGGGCTATGACAGAATCTGTGGTTCGCAATTTTACGTGGCATATTCTCTCTGGATTGGCATACTTACACATAAAGTTTGATTGGCATCGCTGTATATGGTTCTTTAGGGATATCAAAGGTGCAAACTTGCTGGTTGATGCATCAGGCATTGTCAAGCTTGCAGATTTTGGTGTGTCAAAAATTCTGTCAGAGAAATCATATGAACTTTCGTTGAAGGGAAGTCCCTACTGGATGGCTCCAGAGCTCATGATGGCTGCCATGAAGAAAGAATCCAATCCTAACGTTGCCATGGCTGTTGATATATGGAGTTTAGGGTGCACCATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGCGAGTTTCCAGGGCATCAAGCCATGTTCAAGGTACTGCATAGATCCCCAGACATACCCAGTACTTTATCTTCAGAGGGACAAGATTTCCTTGAGCAGTGTTTCCGAAGGAATCCTGCAGATCGACCAACGGCAGCAGTGCTTCTCACACACGCCTTTGTACAAAATTTGCATGATCAAGATGTTCTAGTTCATTCACAACGCTGTCCTAAATATGCCTTTGTACAAAATTTGCATGATCAAGATGTTATAGTTCATTCACAACGCTATCCTAAAGGAGACACCGGACCCAGAGATGATTCACGTAGACATAGTCCAGGACACGGTTCAAAAAATAGCCGTGGTGTAGTGCCAGCCTTCTTTCGCTCACGGATTTANAACAAAATTCAAAATTTAATGGGTGACACTTCCAAAAAACATGATAGTGAGGCATCTAATCATATTACATCTTCTCCTGACTCTCCTTGCTCACTGACAGAAGTTAACAGTCCCCAATCTCCCTTTAAATCTAGTTCTCTCAATTGCATGATCCACCATCATACCCTTCACCGCTATGGGAATCGTGAGGCACCTATGAAACATGTCATCAGCTGAGATTTCACTTCGAAGGATACCGCAGGACAGGGACCGGGGGAGGGGGGCATGAATTTCTTCTGAGGCTCAGTACCCTCACAGTCTTACAGGATATATTGAATAGTTATCATTGCAGGGTGTAGAAGCTAGAAATTCACTAGTTGAAAAAGATATCANCCAGAAGAGGTAAAAAGATATGATAAGTTCAGGTTCATTTGCAGTTATTGTTATTGTTATGTATGTACATAATAGGGCTAGGTTAANTGAACCTATTCCACGCGAGAAATTCACGTGTAAATTTAATTCATTATATATGGTTTAGGCATAACCATTACTTTGTCAAAAAACAAAACAAAACAAAGGCATAACCATTACCAAACACTGCTAGCTCATTACTCTGTGCTTGGTTGGGAGGGGAGGGAAATGGATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	138055	143985	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014240.1	PF00069.20	Pkinase	274	541	3.30E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.799
SRR1783600	control	11.946
SRR1783602	moderate drought stress	13.620
SRR1811619	moderate drought stress	13.523

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.878
DRR006520	Root Summer glycyrrhizin high producing strain	12.603
DRR006521	Root Winter glycyrrhizin high producing strain	14.617
DRR006522	Root Winter glycyrrhizin high producing strain	14.012
DRR006523	Root Summer glycyrrhizin low producing strain	18.069
DRR006524	Root Summer glycyrrhizin low producing strain	18.028
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.015
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.193

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.055
SRR2868004	Drought Stress (root)	31.664
SRR2967015	Control (root)	25.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.940
SRR9715740	Leaf	22.564
SRR9715741	Leaf	30.484
SRR9715739	Root	4.201
SRR9715742	Root	14.808
SRR9715743	Root	13.419

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.934
SRR8749028	MeJA induced 9h	70.339
SRR8749029	MeJA induced 9h	37.275
SRR8749030	Uninduced	120.974
SRR8749031	Uninduced	131.956
SRR8749032	Uninduced	69.645

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.073
SRR8400027	Control - Root	16.634