Gene detail

Gene detail information of Glyur000236s00014238

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26510.1	0	Xanthine/uracil permease family protein
NR	KHN45346.1	0	Nucleobase-ascorbate transporter 3 [Glycine soja]
COG	YP_007285782.1	3.00E-73	xanthine/uracil permease [Halovivax ruber XH-70]
Swissprot	tr\|Q8GZD4\|NAT3_ARATH	0	Nucleobase-ascorbate transporter 3
trEMBL	tr\|I1M8I3\|I1M8I3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G08690.1}

Sequence

Transcript Sequence

>Glyur000236s00014238.1
GTAATTGATTGATTAAAGTCTTGCTTTTTAGTGTTCACAATACACACTCATCCCATCCCACCCTCTCTGTCTCTCTTTGATCCCTTTCGCGTACGTCGGTAGTGCACAAGAAAAAATGTGGAGTCCCATGAGCAACATGAGAGAAATGAGAGTGGAACAGAAAATGGGAGAAACAGAGAACCATCATCAAGAGAAACACCATCGCCATCAAGAGAACCAGCACCAGCACCAGCACCAACAAGAGAACCATCATCAGCATCACCAGCACCAACACCAACCACCCCTGGGAGCTCACTCNCAGGCACCTCATCCACCGCATAATTTTGGTCGTTCAAGGGGACCCATTTGGACTCCATCTGAACAACTCTCCCAGCTTCACTACTGCATCCACTCCAACCCTTCATGGCCACAAGCAATTCTACTGGGTTTTCAGCACTACATTGTGATGCTGGGGACAACAGTTCTGATCGCAACCACCCTAGTTCCACAAATGGGTGGTGATCATGGTGACAAGGCTCGAGTGATTCAGTCGTTGCTGTTTATGTCAGGAGTGAACACACTGCTTCAGACTTGGTTTGGATCAAGGCTTCCAACGGTGATGAGTGGATCCTTGGCTTTTGTTATTCCAGTTATGTCCATCATAAATGATTACACCGACCGAACCTTTGCATCAGAGCACCAGAGGTTTACCTACACAATGAGAACAATCCAGGGGTCCCTGATTGTTTCTTCTTTCATCAACATCTTCCTTGGGTATAGTAAATCATGGGGAAGTTTAACAAGATTGTTTAGTCCAATAGTTATTGTACCTGTGGTATGCCTGGTGGGTCTTGGTCTGTTCATGAGGGGATTTCCTCAGGTTGCAAATTGCGTGCAAATCGGATTACTTATGCTCATTCTACTTGTCATAACCCATCAGTATGTGAAGCGCATTCATCCTATTGCAAATCACGTACTTGAGAGGTATGCTTTACTTCTCTGCATTGCTGTNGTTTGGGCTTTTGCTGCAATCCTTACGGTGGCTGGTGCATACAATTCTGCCAAAGAACGGACCCAAGCAAGTTGTCGCACAGATCGCTCCTACCTCTTATCTTCCGCTCCTTGGATTAAAGTTCCATATCCATTTCAGTGGGGTACTCCCATATTCAGTGCTAGTCATGTCTTTGGGATGATGGGGGCTGCACTTGTCACTTCTGCAGAGACAACTGGGGCTTTCTTTGCAGCTGCAAGGCTCTCTGGTGCAACACCCCCTCCGGCACATGTATTCAGCCGAAGCATAGGGCTACAGGGTATTGGCATGTTGCTTGAAGGCATTTTTGGTTCTGTTGTTGGTACTGCTGCATCAGTTGAAAATGTTGGNCTACTTGGGCTAACTCATATAGGAAGCAGAAGAGTGGTGCAGATATCGTGTGGTTTCATGATCTTCTTCTCCGTATTTGGGAAATTCGGAGCCTTTTTTGCATCAATTCCCTTGGCAATATTTGCAGCTGTATACTGTGTTTTATTTGGTATTGTGGCTGCTGTTGGGATCTCATTTATACAGTTTACCAATAACAACTCCATGAGNAATCTCTATGTTTTGGGTGTGTCCCTGTTTCTAGGGATCTCAATACCTCAATTTTTCGTCACAAACACTGCCCCAGACGGTCGTGGTCCAGTAAGAACAGGTGGTGGATGGTTCGATGACATATTGAACACCATATTCTCATCTCCCCCTACTGTGGCAATAATTGTGGGAACACTTCTTGACAGCACGCTTGATGCCAAACACTCAGCTAATGACAGAGGACTTGCATGGTGGGTCCCTTTCCAGCACAGGGAGGGAGATGTTAGAAATGATGAGTTTTACAATCTTCCTCTCAGGATAAATGAGTATTTTCCCACCAGATTTCTCTAAATTAATGCACTCACCCGACATGTATCATCTTATCCNTGAATCCTGATGTGATCATAGTTTTAAAATCTCCTTGCACAACGACCTGTAAGATATTGACATACGAAAAAANGTTCACCACTTGCACATGTGGCCAAATTTTACCTTCTATTTATGGAGTCTTGTGACATAGTAATTAATTCTTTATATCCCATCCCATGTACTAACATGCAAAAGTTTAATCAAATTATACAGGGTNCCCAAATATGTTAGGGTGCTCTAAAGTTTAATCAAACCTGCAAAAGTACTCATGCGCCCCGATTGAGTTAAGATTTTTTCTATTATATATACCTTTTCTCTTGATAAAATCACCGTGTGTTCTCAGTTCTCACACTTGAGTATAGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	125364	129675	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014238.1	PF00860.15	Xan_ur_permease	99	503	1.70E-70
Glyur000236s00014238.2	PF00860.15	Xan_ur_permease	20	424	1.80E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	122.805
SRR1783600	control	124.607
SRR1783602	moderate drought stress	191.426
SRR1811619	moderate drought stress	187.822

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	155.246
DRR006520	Root Summer glycyrrhizin high producing strain	153.544
DRR006521	Root Winter glycyrrhizin high producing strain	274.785
DRR006522	Root Winter glycyrrhizin high producing strain	268.609
DRR006523	Root Summer glycyrrhizin low producing strain	141.424
DRR006524	Root Summer glycyrrhizin low producing strain	144.667
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.029

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.513
SRR2868004	Drought Stress (root)	8.782
SRR2967015	Control (root)	9.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.479
SRR9715740	Leaf	14.534
SRR9715741	Leaf	13.924
SRR9715739	Root	38.127
SRR9715742	Root	93.494
SRR9715743	Root	84.648

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.120
SRR8749028	MeJA induced 9h	4.881
SRR8749029	MeJA induced 9h	2.054
SRR8749030	Uninduced	0.299
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.820
SRR8400027	Control - Root	90.571