Gene detail

Gene detail information of Glyur000236s00014235

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02020.2	4.00E-69	Major facilitator superfamily protein
NR	CAN78279.1	0	hypothetical protein VITISV_021648 [Vitis vinifera]
COG	YP_001878199.1	3.00E-16	amino acid/peptide transporter [Akkermansia muciniphila ATCC BAA-835]
Swissprot	tr\|Q8H157\|PTR19_ARATH	1.00E-70	Protein NRT1/ PTR FAMILY 4.6
trEMBL	tr\|A5AT47\|A5AT47_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78279.1}

Sequence

Transcript Sequence

>Glyur000236s00014235.1
TTGTTTTGTTTTAACAAATTGAAATACCAATTTGTGGGCGCAGCTATGGAAGGGCTAGAGAACATGGCCTTCGTTGCAAATGCAGTGAGCCTAGTAACTTACTTCTTTGGGTACATGAACTTCAGCTTAACAAAATCAGCCACAACCCTGACCAACTTTATGGGAACTGCATTTTTACTAGCACTAGTTGGCGGGTTAATTTGTGATACCTATCTGTCTAGGTTCAAGACTTGTGTTCTGTTTGCCTGCATGGAATTGTTGGGATATGGTCTCCTCACAGTTCAAGCACACTTCCACCAGTTAAGACCTATCCCCTGCAAAGATGTAGCAACAACCCAAATGGACCAATGTAAGGCTGCTACAGGTGGCGAAGCTGCTATACTATATACTGGCCTATACCTTGTTGCATTAGGAACAGGTGGTGTTAAAGCAGCTTTACCAGCCTTAGGTGCTGACCAGTTTGATGCTAAAGACCCCAAGGAAGCAGCTCAACTATCAAGCTTCTTCAACTGGTTCCTGTTTAGCCTCACCACAGGAGCAATAGTTGGTGTTACTTTCATTGTTTGGATCGGTACCAACCAAGGATGGGATTGGAGCTTTACCGTGTCCACTTTAGCAGTCTTGTTCTCAATTCTGTCCATATACATGGGCAAGTCCTTCTACCGAAACAATATTCCAAAGGGAAGCCCTCTAACTCGAATCATACAGCTTCAGACATTCAGCATACAGCAAAGCACAACCATGGACACCAAAATCGGGGGGTTCAAAGTGCCAGGGCCATCTCTTCCAGTCATCCCTCTGTTATTCATGTTCGTCCTAATCCCTCTATACGACCGCTTCTTCGTCCCACTCGCTCGAAGAATCACAGGAATTCCAACCGGAATCCGACACCTTCAGAGGATCGGAATCGGATTGGTTCTCTCAGCTATATCCATGGCAGTTGCAGGTTTGGTAGAGACACGCCGCAAGTCAGTGGCAATTCAAAACGACATGGTGGATAGCACAGAGCCTTTACCAATAAGTGTGTTTTGGTTGGGTTACCAATATGCTATTTTTGGAGCCGCTGATATGTTCACACTGATTGGGCTTCTCGAGTTTTTCTATGCGGAAAGTTCGGCTGGGATGAAATCGCTGAGCACGGCGATCTCTTGGTGTTCTGTTGCGTTCGGTTACTTTACGAGCACTNTGGTCGTTGAGGTGGTTAACAAGGTGAGTGGAGGGTGGTTGGCCAGTAACAACTTGAATAGGGACAAGCTCAATTACTTTTACTGGCTGTTGGCTGTCATAAGCGTTGTGAACTTTGGGTTTTACTTGGTTTGTGCTTCTTGGTATAGATACAAAACGGTGGAAGACAAGCAAGAAGGTGATTCGACAGATAATAATGTTGACATCGCCAAGGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	106076	109631	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014235.1	PF00854.16	PTR2	75	236	2.70E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.463
SRR1783600	control	0.457
SRR1783602	moderate drought stress	0.339
SRR1811619	moderate drought stress	0.294

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.617
DRR006520	Root Summer glycyrrhizin high producing strain	0.766
DRR006521	Root Winter glycyrrhizin high producing strain	0.079
DRR006522	Root Winter glycyrrhizin high producing strain	0.078
DRR006523	Root Summer glycyrrhizin low producing strain	1.332
DRR006524	Root Summer glycyrrhizin low producing strain	1.259
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.424
SRR2868004	Drought Stress (root)	13.050
SRR2967015	Control (root)	13.468

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.667
SRR9715740	Leaf	0.952
SRR9715741	Leaf	0.065
SRR9715739	Root	0.087
SRR9715742	Root	0.511
SRR9715743	Root	0.109

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.504
SRR8749028	MeJA induced 9h	0.950
SRR8749029	MeJA induced 9h	0.848
SRR8749030	Uninduced	2.842
SRR8749031	Uninduced	1.873
SRR8749032	Uninduced	2.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.564
SRR8400027	Control - Root	1.719