Gene detail information of Glyur000236s00014232 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19020.1 | 2.00E-140 | Leucine-rich repeat (LRR) family protein |
| NR | KHN04530.1 | 0 | Pollen-specific leucine-rich repeat extensin-like protein 1 [Glycine soja] |
| COG | YP_004775215.1 | 2.00E-26 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|O81765|PLRX4_ARATH | 0 | Pollen-specific leucine-rich repeat extensin-like protein 4 (Precursor) |
| trEMBL | tr|I1JTF7|I1JTF7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G03830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00236 | 96418 | 98232 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000236s00014232.1 | PF13855.1 | LRR_8 | 283 | 340 | 6.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.278 |
| SRR1783600 | control | 0.306 |
| SRR1783602 | moderate drought stress | 1.085 |
| SRR1811619 | moderate drought stress | 0.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.411 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.120 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.866 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.321 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.255 |
| SRR2868004 | Drought Stress (root) | 16.866 |
| SRR2967015 | Control (root) | 9.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.961 |
| SRR9715740 | Leaf | 15.030 |
| SRR9715741 | Leaf | 22.160 |
| SRR9715739 | Root | 1.679 |
| SRR9715742 | Root | 4.293 |
| SRR9715743 | Root | 4.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 51.980 |
| SRR8749028 | MeJA induced 9h | 55.372 |
| SRR8749029 | MeJA induced 9h | 66.003 |
| SRR8749030 | Uninduced | 49.103 |
| SRR8749031 | Uninduced | 52.681 |
| SRR8749032 | Uninduced | 54.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.756 |
| SRR8400027 | Control - Root | 1.822 |