Gene detail information of Glyur000236s00014231 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26500.2 | 3.00E-17 | cytochrome b6f complex subunit (petM), putative |
| NR | NP_001236249.1 | 7.78E-65 | uncharacterized protein LOC100500315 [Glycine max] |
| Swissprot | tr|P80883|PETM_SPIOL | 9.00E-12 | Cytochrome b6-f complex subunit 7 (Fragment) |
| trEMBL | tr|C6T1C6|C6T1C6_SOYBN | 3.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00236 | 94590 | 94979 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000236s00014231.1 | PF08041.6 | PetM | 93 | 119 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.187 |
| SRR1783600 | control | 0.309 |
| SRR1783602 | moderate drought stress | 0.536 |
| SRR1811619 | moderate drought stress | 0.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.009 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.317 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.579 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.558 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.711 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.567 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 803.376 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 763.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.668 |
| SRR2868004 | Drought Stress (root) | 30.623 |
| SRR2967015 | Control (root) | 8.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 514.795 |
| SRR9715740 | Leaf | 562.274 |
| SRR9715741 | Leaf | 439.147 |
| SRR9715739 | Root | 1.967 |
| SRR9715742 | Root | 5.135 |
| SRR9715743 | Root | 2.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.667 |
| SRR8749028 | MeJA induced 9h | 38.566 |
| SRR8749029 | MeJA induced 9h | 38.399 |
| SRR8749030 | Uninduced | 49.060 |
| SRR8749031 | Uninduced | 18.407 |
| SRR8749032 | Uninduced | 70.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.797 |
| SRR8400027 | Control - Root | 8.341 |