Gene detail information of Glyur000236s00014226 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49970.1 | 8.00E-67 | pyridoxin (pyrodoxamine) 5'-phosphate oxidase |
| NR | XP_003522762.1 | 4.06E-104 | PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like isoform X1 [Glycine max] |
| COG | YP_005440389.1 | 2.00E-13 | hypothetical protein CLDAP_04520 [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|Q9LTX3|PPOX1_ARATH | 4.00E-78 | Probable NAD(P)HX epimerase (Precursor) |
| trEMBL | tr|I1JV56|I1JV56_SOYBN | 6.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G09950.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00236 | 72005 | 73700 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00275 | pdxH, PNPO | EC:1.4.3.5 | Vitamin B6 metabolism | map00750 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000236s00014226.1 | PF03853.10 | YjeF_N | 110 | 221 | 1.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.905 |
| SRR1783600 | control | 39.829 |
| SRR1783602 | moderate drought stress | 34.572 |
| SRR1811619 | moderate drought stress | 33.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.012 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.940 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.126 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.986 |
| SRR2868004 | Drought Stress (root) | 22.697 |
| SRR2967015 | Control (root) | 26.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.753 |
| SRR9715740 | Leaf | 28.233 |
| SRR9715741 | Leaf | 28.048 |
| SRR9715739 | Root | 15.188 |
| SRR9715742 | Root | 16.376 |
| SRR9715743 | Root | 17.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.265 |
| SRR8749028 | MeJA induced 9h | 16.007 |
| SRR8749029 | MeJA induced 9h | 10.957 |
| SRR8749030 | Uninduced | 0.915 |
| SRR8749031 | Uninduced | 0.220 |
| SRR8749032 | Uninduced | 1.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.221 |
| SRR8400027 | Control - Root | 26.466 |