Gene detail

Gene detail information of Glyur000236s00014224

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49970.1	6.00E-150	pyridoxin (pyrodoxamine) 5'-phosphate oxidase
NR	XP_004501612.1	0	PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like [Cicer arietinum]
COG	YP_007143206.1	2.00E-78	pyridoxamine 5'-phosphate oxidase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9LTX3\|PPOX1_ARATH	0	Probable NAD(P)HX epimerase (Precursor)
trEMBL	tr\|I1JV54\|I1JV54_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G09950.1}

Sequence

Transcript Sequence

>Glyur000236s00014224.1
ATGAGAAGAATCAGGGAACCGAGAATGGGTTCCGCTGCCAAGGGAAAATTCCCTTCCAATTGTTCCCCAAGGCCTCCTTTTGATGATCTGATCCAAAGACTTGTTTCTTTACATAATTATAATCAAATTGGCCAAAAAAGACCAGTTATAGTCTCTGTAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGAATTAAACCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTATGTGCAAAGAAATTTGGCGGTTCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCTATTGCTGAAAGGTATAAGCTTATACTTCCACCATATCCTGGAACATCCATGTGTGTCCGAATTGGAAAGCCTCCTCAGATTGACATTTCAGCTCTACGAGAGAACTATATCTCTCCAGAACTTCTTGAAGACCAGGTGGAGGCAGACCCCATGAATCAGTTTCGTAAATGGTTTGATGATGCATTGGCTGCTAGGTTGAGGGAACCAAATGCTATGGCTTTGTCAACTGTAGGAAAGGATGGAAAACCCTCATCACGAATCGTATTGCTAAAAGGATTGGACAAGGACGGATTTGTGTGGTACACAAATTATGAAAGTCAAAAGGCGTGTGAATTATCTGAAAATCCACATGCAGCACTTCTTTTTTACTGGGATGGTTTAAACCGGGAGGTACGGGTGGAGGGGTCTGTTCAGAAAATTTCTGAGGAGGAATCAGAACAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGCCAGCAAGCAGAGTACTGTGGTGCCTGGTAGGCATGTTCTTCATCAGCAGTACAAAGAGCTGGAACAAAAATATGCTGATGGAAGTTTGATCCCTAAACCTAAAAACTGGGGAGGATACAGGCTAACACCGCGACTTTTTGAGTTTTGGCAAGGACAGCAATCTCGCTTGCATGACAGGTTGCGATATTCTCCCCATGAGATCAATGGACAGCGGGAGTGGAAGATTGAGCGGTTGGCTCCCTGATAATTTTATCTTTTTATTTTCAATATCTCAACATGTGAAAAATAAGGGAGATGAACTTGTTTCTATATGTCGACATTTTTTTGCAGTATATGTCGTTGTGCTGTTTCCATTTTTATATACTTTAGTTTTTTTTTTCCCAGCATTCTAAATAGACTTGACCGCAAGCTCTTCCAGAACGATGAGCTTGCCCCGTTGAAAATATGTAAAAATGAGATGCAGGTCTAATTGTAAGTAAATGAAAAGACAAACCAATAATGCTGAAAGAAGATTGGGACACGAAGTTCCATTGATATAGTGCAGCATGTTGTATACATAACTTTTTAATTTTACAGAAATTCATTTCCACACCTAACTGGAGAAATGAGAGGCCGGATCTGATAGAACCAATACTATTAAACTTGGATTGGCCTTGCTGGACATATATATACATATGTTTCTTCAGTATAAAATCAATAAATTAATTATCGGTTCATGTGGTTCAATTACTGATTCTATNAAAAAATCACTAACTCAATACTTTGACCAAGTCGATGATCAGTTTGAATTTAATGACATTGGGCTAGAGCCCTAATAGAAAACCTAACCCATGCCTCCCACCTCCTCTGCCGCACAAAGGAGGTGCGAATATCATTGGTTCCATTTCGCACCAGTTGGCCATCGAAGACATCCCAAACTGTAAGTGTTAATATGCAGTATATTTATTGCCTGTGTATAGCCTCTATCTTATCTATCATTTTTACATTGATGTAAACAACAAAAACGGCTCCTGTTGAGGGTGAAATGCAAAATAGTATTAATAGTACGCGTTTCGTATTCAAGATGAGGCCCCTTTCTTTTCATTTTCTTATCGTGTGAATGTAATGCTTCTCCAAAAGTTGGGACGCGTCTTCTGTGGGATATTATTGATATGGTAGGTATTGATTTGGTTAACGTCGATCATCAACCGATTGGCTCCAGCGTGAATTTAACCAGTAAATTTCCTAACTTTTCANGCTTCCTCTCCTCCTCCTTTTGACCATGTTGAAGCTTAATTTAAGGCCAATTTGAGTCAAGCCGAAGTGATCCCTGACCTGACTAACGACACCGCCTTTTCTTTTATAAAGAAAGGTTCAATGAGTGCTCTCTCAATCTGTTCATATTTTTATGCGAAACACAAAGGGCACTGTTGTTACATGTCACGCTTGAAAGATAGAGGACCAAGAAGTTGAGATGGGACGGAGCTTAAATTAGAGTTGAGAGTTCTACTGATTCTAGAGGAGAAATGATTGGAATGCTCTATCCCTCGCTTTCAAATCATGCACCAAAAAGAAAAAGGTTAATATTGATAGAATTTGAAGTTGTGTTGTAGATATTCCACGAGTGGGGTGGGAGCNGTTTGATCGAACTGATGAGTTAGTAGCATTGGGAAATAACTAATTAGTGGTTCTNTTAGAAGTGCAATATAATGCAATGACATCAACATCAAGCCTAAGACTGAGAGCAACCATCCATGGAGGATGACCCATTTGTCAATTCTAGAGTAGGGACTTCCCCCGCCCCTCCCAAAAAAAAAACAATTCCATCAATTTTATTTTTNTGGTCAATAACAATTCCATCAAGTTGAAGATCCCTAATAACATTCTTAGAGCACCCACAATGAAACATTCTACTTTGGGATACTTAAATGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00236	62133	67150	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00275	pdxH, PNPO	EC:1.4.3.5	Vitamin B6 metabolism	map00750

Gene Ontology

biological_process

GO:0008615 pyridoxine biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004733 pyridoxamine-phosphate oxidase activity

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000236s00014224.1	PF03853.10	YjeF_N	41	85	1.70E-09
Glyur000236s00014224.1	PF01243.15	Pyridox_oxidase	162	248	6.20E-26
Glyur000236s00014224.1	PF10590.4	PNPOx_C	302	346	2.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.583
SRR1783600	control	7.656
SRR1783602	moderate drought stress	6.750
SRR1811619	moderate drought stress	6.787

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.736
DRR006520	Root Summer glycyrrhizin high producing strain	10.501
DRR006521	Root Winter glycyrrhizin high producing strain	6.786
DRR006522	Root Winter glycyrrhizin high producing strain	6.650
DRR006523	Root Summer glycyrrhizin low producing strain	5.350
DRR006524	Root Summer glycyrrhizin low producing strain	5.420
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.436

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.018
SRR2868004	Drought Stress (root)	13.109
SRR2967015	Control (root)	12.695

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.661
SRR9715740	Leaf	24.438
SRR9715741	Leaf	19.853
SRR9715739	Root	8.245
SRR9715742	Root	8.031
SRR9715743	Root	9.039

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.281
SRR8749028	MeJA induced 9h	8.565
SRR8749029	MeJA induced 9h	10.616
SRR8749030	Uninduced	2.503
SRR8749031	Uninduced	0.655
SRR8749032	Uninduced	2.277

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.078
SRR8400027	Control - Root	15.830