Gene detail information of Glyur000236s00014222.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24660.1 | 3.00E-51 | homeobox protein 22 |
| NR | XP_006581501.1 | 1.44E-124 | PREDICTED: ZF-HD homeobox protein At4g24660-like isoform X2 [Glycine max] |
| Swissprot | tr|Q6YXH5|ZHD1_ORYSJ | 4.00E-69 | Zinc-finger homeodomain protein 1 |
| trEMBL | tr|I1K9P4|I1K9P4_SOYBN | 3.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G09970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00236 | 39698 | 40483 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000236s00014222.1 | PF04770.7 | ZF-HD_dimer | 55 | 111 | 4.10E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.510 |
| SRR1783600 | control | 0.399 |
| SRR1783602 | moderate drought stress | 0.334 |
| SRR1811619 | moderate drought stress | 0.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.137 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.142 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.008 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.492 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.532 |
| SRR2868004 | Drought Stress (root) | 0.964 |
| SRR2967015 | Control (root) | 1.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.528 |
| SRR9715740 | Leaf | 44.673 |
| SRR9715741 | Leaf | 40.893 |
| SRR9715739 | Root | 1.595 |
| SRR9715742 | Root | 3.779 |
| SRR9715743 | Root | 2.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.690 |
| SRR8749028 | MeJA induced 9h | 0.233 |
| SRR8749029 | MeJA induced 9h | 0.232 |
| SRR8749030 | Uninduced | 1.853 |
| SRR8749031 | Uninduced | 1.404 |
| SRR8749032 | Uninduced | 3.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.016 |
| SRR8400027 | Control - Root | 3.288 |