Gene detail

Gene detail information of Glyur000235s00019562

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18390.2	2.00E-153	Protein kinase superfamily protein
NR	XP_006604084.1	0	PREDICTED: probable serine/threonine-protein kinase At1g18390-like isoform X1 [Glycine max]
COG	YP_002763346.1	2.00E-28	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	0	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|I1L2R0\|I1L2R0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G19730.1}

Sequence

Transcript Sequence

>Glyur000235s00019562.1
GCATATCGAAGATTGATTCAAAGATATGGGGCAGAGAAGAACAACTGGACAACTCCTTTCTACTCAAAGGATGTCAAAAGCATGTACTCCAGATCGCTGGTCAAACCCTCCTCACAACAGTTCACAATTTTTAGTACAACTCTCTCTTATCCCTTCTCCAATGCTCTCCTCCATCTAGAGCTTGACAAGGCTCCAAAAATGAACCAAAAGAGCCTCTCGTCTATCCTCAATCCCCTCTGTTCTCCCCTGGTTTATGCACACATCATCCTCTTCTATCTCCTAACCAGAACCGCTCTTTGCTCCGTGGACCCNACGTACGAAGCATGTGAACCCAAAACCTGCGGGAACCATAGCATAAGCTACCCGTTCTACATCGAAGGAACACAAAAACCCTTTTGTGGGATCCCTGGTTTCGGTCTCACTTGTGACAAAAATGGCTTCCCAATCCTCAATATTTCCAATACCCTGTACATAATTGACCNAATACTCTACCAAAACCAATCACTGCGAGTCTCCAACGCCGTGTTTTCGAGACCAAACATCACTAGGGGTTGTTTTTCTCCAACCCAGAACCTGACACTTCCCAATAACCTGTTCCGTCTTGTTCCGAATCAAAGTGACGTGGTATTGTTCTTCGGCTGCGACTTACCGTCGCTGCCCAGAGAGGATCAAAATCTAAGCTTTGTGTCAGGGAATTGCACGGGTGGGGTGGTGANTGCGAAGGTGGAAGGTGATGGGAAAGAAGGGATTCAAGAGGCGCTGAGAAAAGGGTTCTGGTTGAATTGGATCGCCGCTGACTGCAGGCAGTGCAATAGCAGTGGAGGGAGGTGTGGGTTCGATCCCGGTGAATACAAATTCAAGTGCTACTGCACCGACAGAGTTCATTCTGCAAAATGTGATCTTCCAGTTGCAGAGAAAAAAGGGTTGAGCCCGCGTGCCAAACTGGGTATAGGTTTGGGTATTGNAATCCTAGGCACCTTGATAATAATTGGGTTGCTGTTTCTCCTTCTACTCTACAAACGAAAACATGCTACCACAGTTAGACACTTCCAATCTAGTAATTCTTATTCAGATTCCTCCTTACATCCACGCCGAGAAAGTGGTAATGAGTACTTCAGAGTTCCGGTCTTCTCCTACGAGGAGCTTAAAAAAGNAACAAACAATTTCGACCATACTAAAGAACTTGGAGATGGAGGCTTTGGTACTGTCTACTATGGGAAACTACCAGATGGACGGGAAGTTGCTGTCAAACGCTTATACGAGCACAACTACAGACGAGTAGAACAGTTCATGAATGAGATCAAGATCCTCACGAATTTGCATCACAAAAACCTTGTGTCCCTCTATGGCTGTACTTCACGGCACAGCCGCGAACTACTGCTTGTGTATGAATACNTCTCAAATGGCACCGTTGCTTGTCATCTCCACGGTGGATTGGTGAAGCCCGGCTTACTACCNTGGTCTACACGAATTAAAATTGCCATAGAGACGGCTAGTGCATTGGCTTATCTCCATGCTTCCGGTATTATTCACCGTGATGTGAAAAGCAGCAACATACTCCTTGAGAGCAATTATTGTGTTAAAGTTGCAGACTTTGGCCTTTCAAGGCTATTCCCAGAGGATGTCACTCATGTCTCCACAGCTCCACAAGGGACCCCAGGTTATCTTGACCCGGAGTATCACCAATGTTACCAGCTTACGAGCAAGAGTGATGTATACAGTTTTGGAGTTGTGCTCATTGAGCTGATATCATCCAAGCCTGCTGTTGATATAAGCAGGAGTAAGGATGAGATTAACTTGTCAAATCTAGCCACAAAGAAGATTCAAGAGAGTGCAATTGGTGATCTGGTAGATCCTTCTCTTGGTTTTCATTCAGACAATGAGGTTAAGAGGATGATAGTTTCAGTGGCAGAATTGGCTTTTCAGTGTTTACAAAGGGACAAGGAGTTGAGACCTTCCATGGAAGAAGTGTTGGATGAACTGAGGAGAATTAATGAGTGTGGGAAGGATGAGGTTGAGCCTGTGGAGGAGGAAGATGTTCATGGGGTTGGAGTTTCAGCCAGTAATGTACATCCACCACCACCACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00235	185960	196612	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000235s00019562.1	PF13947.1	GUB_WAK_bind	108	215	7.40E-11
Glyur000235s00019562.1	PF14380.1	WAK_assoc	245	293	4.40E-13
Glyur000235s00019562.1	PF00069.20	Pkinase	392	659	1.10E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.549
SRR1783600	control	7.225
SRR1783602	moderate drought stress	6.226
SRR1811619	moderate drought stress	5.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.140
DRR006520	Root Summer glycyrrhizin high producing strain	7.259
DRR006521	Root Winter glycyrrhizin high producing strain	3.677
DRR006522	Root Winter glycyrrhizin high producing strain	3.845
DRR006523	Root Summer glycyrrhizin low producing strain	21.650
DRR006524	Root Summer glycyrrhizin low producing strain	21.554
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.325
SRR2868004	Drought Stress (root)	26.003
SRR2967015	Control (root)	25.803

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.058
SRR9715740	Leaf	18.331
SRR9715741	Leaf	28.764
SRR9715739	Root	1.430
SRR9715742	Root	12.419
SRR9715743	Root	8.551

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.233
SRR8749028	MeJA induced 9h	20.504
SRR8749029	MeJA induced 9h	8.864
SRR8749030	Uninduced	39.293
SRR8749031	Uninduced	27.011
SRR8749032	Uninduced	11.578

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.310
SRR8400027	Control - Root	11.106