Gene detail information of Glyur000235s00019557 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18280.1 | 2.00E-20 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | KHN42434.1 | 2.67E-35 | Putative non-specific lipid-transfer protein AKCS9 [Glycine soja] |
| Swissprot | tr|P86809|NLTP2_APIGA | 2.00E-21 | Non-specific lipid-transfer protein 2 {ECO:0000303|PubMed:23913675} |
| trEMBL | tr|C6T296|C6T296_SOYBN | 5.00E-35 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU15740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00235 | 163064 | 163285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000235s00019557.1 | PF14368.1 | LTP_2 | 6 | 60 | 3.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.394 |
| SRR1783600 | control | 32.604 |
| SRR1783602 | moderate drought stress | 33.187 |
| SRR1811619 | moderate drought stress | 34.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.552 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.503 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.185 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.896 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.879 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.838 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.438 |
| SRR2868004 | Drought Stress (root) | 24.437 |
| SRR2967015 | Control (root) | 28.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.510 |
| SRR9715740 | Leaf | 0.351 |
| SRR9715741 | Leaf | 0.384 |
| SRR9715739 | Root | 79.387 |
| SRR9715742 | Root | 74.254 |
| SRR9715743 | Root | 72.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.084 |
| SRR8749028 | MeJA induced 9h | 2.114 |
| SRR8749029 | MeJA induced 9h | 1.364 |
| SRR8749030 | Uninduced | 0.252 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 164.947 |
| SRR8400027 | Control - Root | 188.569 |