Gene detail information of Glyur000235s00019556 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18260.1 | 1.00E-49 | Reticulon family protein |
| NR | XP_004497054.1 | 8.45E-123 | PREDICTED: reticulon-like protein B9-like [Cicer arietinum] |
| Swissprot | tr|Q9LJQ5|RTNLI_ARATH | 1.00E-60 | Reticulon-like protein B9 |
| trEMBL | tr|A0A072VQ94|A0A072VQ94_MEDTR | 3.00E-119 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00235 | 156153 | 157985 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000235s00019556.1 | PF02453.12 | Reticulon | 33 | 189 | 2.10E-36 |
| Glyur000235s00019556.2 | PF02453.12 | Reticulon | 15 | 172 | 8.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.233 |
| SRR1783600 | control | 11.425 |
| SRR1783602 | moderate drought stress | 8.520 |
| SRR1811619 | moderate drought stress | 8.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.400 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.906 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.584 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.489 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.928 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.680 |
| SRR2868004 | Drought Stress (root) | 19.497 |
| SRR2967015 | Control (root) | 14.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.759 |
| SRR9715740 | Leaf | 14.507 |
| SRR9715741 | Leaf | 6.538 |
| SRR9715739 | Root | 5.663 |
| SRR9715742 | Root | 8.630 |
| SRR9715743 | Root | 8.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.389 |
| SRR8749028 | MeJA induced 9h | 6.313 |
| SRR8749029 | MeJA induced 9h | 4.307 |
| SRR8749030 | Uninduced | 5.229 |
| SRR8749031 | Uninduced | 3.652 |
| SRR8749032 | Uninduced | 2.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.644 |
| SRR8400027 | Control - Root | 32.278 |