Gene detail

Gene detail information of Glyur000235s00019554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17770.1	0	trehalose phosphatase/synthase 5
NR	XP_004497050.1	0	PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5-like isoform X1 [Cicer arietinum]
COG	YP_008872897.1	4.00E-124	hypothetical protein RAAC3_TM7C00001G0736 [Candidatus Saccharibacteria bacterium RAAC3_TM7_1]
Swissprot	tr\|O23617\|TPS5_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
trEMBL	tr\|I1NFN9\|I1NFN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G25540.4}

Sequence

Transcript Sequence

>Glyur000235s00019554.1
ATGAAAGAAGAATCTTTGGTGACTGTGAGCAATCAATATAGGCCTGCTTCTACTTCTTGTCCAGCAAAGTTCATTCTGCCATCATCAAATTCAAAAATGGTTTCGAGATCATATTCNAACTTGTTAGATCTTACTTCCTGTGGCTCCCCAACTTTTGGTCGCGAGAAGAAAAGGCTTCCACGAGTGGCAACTGTTGCTGGAGTACTGTCTGAACTGGATGATGAGACCAGCAACAGTGTTGGCTCTGATGCTCCCTCTTCCATCTCTCAAGAGAGGATGATCATTGTTGGTAACCAACTTCCATTAAAGGCACACAGAAAAGACAATGGTGTGTGGGAATTCACATGGGATGAGGACTCACTTCTTTTACAGCTGAAAGATGGTCTTGGGGATGATGTGGAAACAATCTATATTGGTTGTCTTAAAGACGAAATTGATCCAAGTGAACAAGATGATGTTGCTCAGTACTTGCTCGACACTTTCAAATGTGTGCCCACGTTCCTCCCTCCTGAGCTTTTTAGTAAATTCTATCACGGTTTCTGCAAGCAACATCTATGGCCTTTGTTTCACTACATGCTTCCACTNTCACCTGATCTTGGTGGTCGATTCGATAGGTCCCTTTGGCAGGCTTATGTTTCTGTGAACAAGATATTTGCAGACAAAGTGATGGAAGTCATTAGCCCTGATGATGACTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTTCCAACGTTTTTGAGGAAGAGATTTAACAGGGCGAGGCTAGGATTNTTCCTCCATAGTCCGTTTCCTTCCTCAGAGATATACCGAACCCTTCCTGTTAGGGATGAGCTTCTTAGAGCTCTTCTGAATTCTGATCTTATTGGGTTCCATACTTTTGACTATGCCAGGCATTTCCTCTCCTGTTGCAGTAGAATGCTAGGGATTTCTTATCAATCCAAGCGGGGCTATATTGGTCTTGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCTGTTGGCATTCATATAGGTCAGCTTCAATCANTCATGAATCTTCCTGAGACGGAAAGCAAGGTTGCGGAGTTAAGAAACCAGTTCAGAGATCAAACTGTGATGCTTGGGGTCGATGACATGGATATCTTCAAAGGAATAAGCTTAAAACTTTTGGCCATGGAACAATTGCTTTTACAACATGCCGATAAGAGGGGCAAAGTTGTTCTGGTCCAAATTGCAAACCCTGCTAGAGGCCGGGGAAAGGATGTGCAAGAAGTGCAGAGTGAAACATATGCAACAGTGAAAAGGATAAATGATACATTTGGAAGGTCTGGATACACACCTGTGATCTTGATCGATACGCCGCTTCAGAGTTATGAGCGAATCGCGTATTATGTGATTGCAGAATGTTGTCTTGTAACAGCAGTGAGGGATGGGATGAACCTTATACCCTATGAGTATGTCATTTGTAGGCAAGGAAATGAGAAGATAGATGAGATTTTAGGAATAAACCCNTTGACCCAAAAGAAGAGCATGCTGGTGGTGTCTGAGTTCATTGGATGCTCTCCATCATTAAGTGGGGCAATTCGCGTGAATCCATGGAACATTGATGCTGTTGCTGAAGCTATGGATTCTGCCTTAATGGTCCCGGAGTCTGAAAAACAGATGCGGCATGAGAAGCATTATAGGTACGTTAGTACGCATGATGTTGCATATTGGGCGCGTAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGGGATCATCTGAGGAGGAGATGCTGGGGGATTGGTTTTGGTTTAGGGTTTCGAGTAATCGCTTTGGATCCAAACTTTAGAAAGCTATCTGTGGANCATATTGTTTCAGCTTATAAGAGGACCAAACACCGAGCAATTCTTTTGGATTATGATACTACTATGGTGCAGCCTGGATCAATTAGTACAACACCTAATGCTGAAGCTGTTGGCATCTTGAACAGCTTGTGCAGGGACACCAGGAATTGTGTTTTCATTGTAAGTGGAAAGGAAAGAAAGACTCTTACTGAATGGTTTGCTCCTTGTGAAAGGCTGGGAATCGCTGCAGAGCATGGTTATTTCGTGAGGACAAATCATAATGCAGAATGGGAAGCTTGTGTTTCTGTTCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATATGGAAACAACTGATGGTTCTAACATAGANGCCAAAGAAAGTGCTCTTGTTTGGAATTACGAGTACGCAGACCGAGATTTTGGTTCATGCCAGGCCAAGGAGATTTTGGATCATCTGGAAAGTGTTCTTGCCAATGAGCCTGTTTCTGTTAAAAGTGGCCCAAACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCAGAACGTCTTCTGTTAACAATGCAACAAAAGGGAGTGACTCCAGATTTTGTTCTATGCATTGGGGATGACAGGTCAGATGAGGATATGTTTGGCGTGATAGCGAGTGCACGGGCATCGCTATCCCCCGTGGCCGATGTGTTTCCTTGCACCGTTGGACAGAAACCTAGCAAGGCCAAGTATTACTTGGAAGACACAAGTGAGATTTTGAGAATGTTGCAGGGCCTTGCCAATGCTTCTGAGCAGTGTGCTAAAAAGGTTCTTCCTAGTTCCTAGTTTCCTCATTAAGCTTTTTTTTTTTTTTACCCTTTCTAATCTGTATCAGTTATAAACTATTGATTACAATGTATTTGTCTATACTGGGTTGGGTTATCTTGTATTGGATTTCTTGATCTATTTAATTTTATGGCTCACTTGCCTTCANTTATTAAGATCTTAGTCTTGCCAGGTCATCCAATATGCAAAGTGATATCATATCCCAACATTGTATTCAAGGTTGTTTTTGTAAATGGATAGTGCTGCATTTGTCGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00235	141672	146148	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000235s00019554.1	PF00982.16	Glyco_transf_20	92	577	9.80E-185
Glyur000235s00019554.1	PF02358.11	Trehalose_PPase	626	859	4.60E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.196
SRR1783600	control	50.277
SRR1783602	moderate drought stress	32.038
SRR1811619	moderate drought stress	31.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.311
DRR006520	Root Summer glycyrrhizin high producing strain	38.104
DRR006521	Root Winter glycyrrhizin high producing strain	12.932
DRR006522	Root Winter glycyrrhizin high producing strain	12.707
DRR006523	Root Summer glycyrrhizin low producing strain	53.664
DRR006524	Root Summer glycyrrhizin low producing strain	53.492
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.703
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	93.737
SRR2868004	Drought Stress (root)	85.290
SRR2967015	Control (root)	71.972

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.402
SRR9715740	Leaf	24.024
SRR9715741	Leaf	25.894
SRR9715739	Root	20.875
SRR9715742	Root	66.090
SRR9715743	Root	60.387

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.202
SRR8749028	MeJA induced 9h	16.065
SRR8749029	MeJA induced 9h	9.962
SRR8749030	Uninduced	0.744
SRR8749031	Uninduced	0.998
SRR8749032	Uninduced	1.520

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	113.348
SRR8400027	Control - Root	118.475