Gene detail

Gene detail information of Glyur000235s00019551

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01220.2	1.00E-147	Nucleotidylyl transferase superfamily protein
NR	XP_004497048.1	0	PREDICTED: uncharacterized protein LOC101512519 isoform X1 [Cicer arietinum]
COG	YP_001275827.1	4.00E-65	hypothetical protein RoseRS_1482 [Roseiflexus sp. RS-1]
trEMBL	tr\|A0A072VR82\|A0A072VR82_MEDTR	0	Nucleotidyltransferase {ECO:0000313\|EMBL:KEH44191.1}

Sequence

Transcript Sequence

>Glyur000235s00019551.1
CCCGAATTGTCGTCCCGAGGATTTTTACCCTTTGTTAAAACGCCGTGACATAGCAATGGTGGTTGTCGTTCGAGGACATTGTATTTTGTAATCCGCGGAGGTTGAAAAACGACATGACAGCGACGGTGCGTTATTATAACGGGAAGAGGGAGATGAGACGAAAGATCGATAGGCAGAGGAGAGGAGAGAATGACGGAAAGTTGCATCAGAAGCGCCGNAGAAGCGATACATTCCTCTCCATTCCAAACCGTTCTCTATCTCGCCGGNGGAGCTTCTCAACTCCTTGGTTGGTTGCTATCTGTTCCCGGTGCTTCTAATACCGTGCTCGAAGCCCTCGTTCCTTACTCTAGGATGTCTATGATCCAGTTACTCGGCAAGATTCCGTCCCAGTTTTGTAGCCAACAGACTGCTGAAGACATGGCTTTATTGGCTTACAATCGTGCTCTTAAGCTCTCCACACCAGGATCCCCGGTTATTGGTGTGGGCTTCACTGGTTCTTTGGTTAGCAGCCGTCCAAAACTCGGGGAACACAGATTTTATATGTCAACAAGGACTGCTGACCGACTTTGGATATCAAGAGTGACCTTGACTAAAGCTATTGCAAATGCATGCAAAGTTCCAGCANCCTCTGTTTCAGAGTTGAGTGAATCAGATGTATCTGATGAATGTGAAAAACAATTCAATGAAGATCAAGAGTTAGAACAACTTATAAATGGTCAAATATGCTTCAAAATTTATCCATTTGGAAGTGAGATACCAGCAGAAAGGAAAATAATATTGCCTGGTTCTTTCAATCCCTTACATGATGGGCATCTCANGCTTATGGAAGTTGCAACTCGCATTTGTGGTGATGGGTATCCATGCTTTGAAATATCTGCAGTCAACGCAGACAAACCTCCATTATTGGTATCTCAGATCAAGGATCGCGTCAAGCAATTTGAAAAAGTTGGAAAGACAGTAATTATATCCAATCAGCCTTTTTTTTATAAGAAGGCTGAACTTTTTCCAGGCAGTGCTTTTGTAATTGGTGCTGACACAGCAGTGAGGCTTATTAATCCTAAATACTATGATGGAGACTACAACAAGATGNTGAAGATACTTATTGGTTGTAAAGACACAGGATGTACTTTCCTTGTGGGTGGTCGGAATGTGGATGGTGCTTTCAAGGTTCTTGATGATTTTGATGTTCCAGAGGAACTAAAAGACATGTTCATCTCCATTCCAGCTGAACAGTTCCGCGTGGATATATCCTCTACTGAGATAAGAAAAAGAAGTGGGATGTAAATATTTTTATGGCTGAAAGTCAATATATTATTATAGTCAAGGATGAAATCACTTTCTTCCATAAAGCACAAATTTCCACTATATAAAAGTGCGAAACTAGGTCCTCTGCAGTTTGAAATTTGCCGCAGGAGGTACAGTTTTCTGATCCAGGATTNTATGTTCATTGAACTATCCTTTTCATAGTAGTTTGTGATATATGAGAAAAAAATTGAGGGTCAAGATTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00235	130442	135416	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000235s00019551.1	PF01467.21	CTP_transf_2	197	361	6.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.427
SRR1783600	control	7.535
SRR1783602	moderate drought stress	6.191
SRR1811619	moderate drought stress	5.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.514
DRR006520	Root Summer glycyrrhizin high producing strain	9.444
DRR006521	Root Winter glycyrrhizin high producing strain	46.893
DRR006522	Root Winter glycyrrhizin high producing strain	46.341
DRR006523	Root Summer glycyrrhizin low producing strain	13.680
DRR006524	Root Summer glycyrrhizin low producing strain	13.437
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.089

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.949
SRR2868004	Drought Stress (root)	14.142
SRR2967015	Control (root)	13.826

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.947
SRR9715740	Leaf	11.227
SRR9715741	Leaf	13.746
SRR9715739	Root	2.233
SRR9715742	Root	5.191
SRR9715743	Root	5.421

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.469
SRR8749028	MeJA induced 9h	14.420
SRR8749029	MeJA induced 9h	12.004
SRR8749030	Uninduced	14.280
SRR8749031	Uninduced	11.961
SRR8749032	Uninduced	14.862

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.531
SRR8400027	Control - Root	12.476