Gene detail

Gene detail information of Glyur000235s00019549.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01210.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003555253.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Glycine max]
COG	YP_003194814.1	7.00E-28	hypothetical protein RB2501_09035 [Robiginitalea biformata HTCC2501]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|I1NFP5\|I1NFP5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G25570.1}

Sequence

Transcript Sequence

>Glyur000235s00019549.1
CACTCACTAACCTTGTAAAGTTGTATTGCATTCTCTCCGAGGCCGACCTCTTCCTTTCTCATTCTTCAACACACTTTTTCACTGTTAAAGCTTTTCTCTGTCCCAAAACAGCTTGCATTGTCTTTCTTTCATTCTAGCCTTTTTCTTCTCCTTGTTTTCTTCTCTGTGAAATAAGCCAGCCAAGCTAACCCTGCCTCGCTGATCTTCTTCTTCTTTCCCCTTGGATGTTGGATTCGCTCCAACGGTCACTTAGTTGGAGGAGATGTTCCCTTTTGTTTTGCTCTNTTTCCTTCTCTGTTGCAACTCTCTTGCACCTGTTGTGAACTCTCTGAATGCCGAAGGCTATGTGCTTTTGACACTGAANCAGTCCATCACAGACCCACAAGGGTCTATGAGTAACTGGAATTCCTCTGATGACAACCCCTGTTCATGGAATGGTGTTACTTGCAAGGACCAAACCGTTGTGTCCATTAGCATCCCAAAGAGGAAACTTTATGGCTCTCTTCCTTCTACTCTAGGCTCTCTTTCCCAGCTCCGCCATGTGAACTTCAGGAACAACAAGCTCTTTGGAAGCTTGCCTTCACAGCTCTTTCAAGCGCAGGGACTGCAAAGTTTGGTGCTTTATGGCAATTCACTTTCTGGGCCTGTTCCAAATGAGATTCAGAACCTCAGGTACCTTCAAACTCTAGATTTATCCCAAAACTCCTTCAATGGGTCATTGCCTGCTGCAATTGTCCAATGCAAGAGGCTCAAAACCCTTATCCTCAGTAGAAACAATTTCACTGGCCCTTTGCCTGTTGGATTTGGTACTAGTTTTCTTTCTCTGGAAAAACTAGACCTTTCTTTCAATCAATTCAATGGTTCAATTCCTAGTGACATGGGAAATCTATCAAGTTTGCAAGGAACTGCTGATTTGTCTCATAATCACTTTAGTGGTTCAATCCCAGCCAGCCTTGGCAATCTTCCTGAGAAGGTTTACATTGATCTCACTTACAACAATTTAGATGGTCCAATACCCCAAACTGGTGCTTTAATGAATAGAGGACCAACTGCTTTTATTGGCAACCCTGGTCTATGTGGGCCACCTTTGAAGAATCCATGTGGCTCTGATACTCCAGCTACTAGTTCACCTTCCTCACTTCCATTCCTTCCTGATAACCACCCACCTCAGGATGCTGGCAATGGTTCTACGACAAGTGAGAAAAGCAAAGGGCTAAGTAAGGGTGCTGTGGTTGGCATTGTTGTGGGTGATTTGGTTGGAATTTGCCTTTTAGGTTTGTTGTTCTCTTTCTTTTATTCAAGGGTTTGTGGTTTTAACCAGGATCAGGATGAAGANGGTGTTGATAGTAAGGGAAGGAAAGGAAGGAATGACTGTTTGTGCTTCAGAAAGGATGAATCTGAGGTCCTATCTGATAATGTTGAGCAATATGATCTTGTCCCATTAGATGGCCAAGTGGNCTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTTCTTGAAGATGGGCTTGCTTTGGCTGTGAGAAGGTTGGGGGAGGGAGGTTCTCAAAGGTTTAAGGAGTTCCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGACATCCAAACATTGTGACCCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTGATATATGATTATATACCAAATGGAAGCCTTGCCACAGCAATTCATGGGAAGGCTGGACTCATCGCATTTACGCCGCTATCTTGGTCCTATCGATTGAAAATCATGAAAGGAACTGCAAAAGGATTGGCATATCTGCATGAATTCAGCCCCAAGAAATATGTCCATGGAGATCTCAAGCCAAGTAACATACTTCTTGGACATAACATGACACCTTACATTTCCGATTTCGGACTCGGGCGCCTTGCGAATATCGCGGGGGGTTCCCCAACCTTGCAATCGAACCGAGTGGCTGCAGAGAAACTACAAGAAAGACAGAAGAGCTTGTCCACTGAAGTCGCAGCTAATATTATGGGAAGTGGTTATCAGGCTCCTGAAGCACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTTTATTCATATGGTGTGATTTTGTTGGAAATGATCACAGGAAGGTTACCAATTGTCCAAGTTGGTAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAGAAGAAGCCACTCTCAGACGTATTAGACCCATACTTGGCTGAAGATGCAGATAGGGAGGAAGAGATGATTGCAGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCTACAATGAGGCACGTGCTTGATGCTTTGGATAGATTGTCCATTTCCTCTGATTGAGAAATTTCAGTGAGCTGTGAAATTGTGTGAATCCAGCTCATTTGGAAGCTTTTGTTTTTTACTCTCTTGGTCTCCGTTTAAGAATCTGCTTGGATTTTCATAGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00235	110420	113023	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000235s00019549.1	PF08263.7	LRRNT_2	24	62	8.60E-12
Glyur000235s00019549.1	PF13516.1	LRR_6	160	177	1.5
Glyur000235s00019549.1	PF00560.28	LRR_1	187	209	0.049
Glyur000235s00019549.1	PF00069.20	Pkinase	418	701	3.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.508
SRR1783600	control	15.515
SRR1783602	moderate drought stress	10.774
SRR1811619	moderate drought stress	10.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.701
DRR006520	Root Summer glycyrrhizin high producing strain	17.392
DRR006521	Root Winter glycyrrhizin high producing strain	3.806
DRR006522	Root Winter glycyrrhizin high producing strain	3.690
DRR006523	Root Summer glycyrrhizin low producing strain	14.191
DRR006524	Root Summer glycyrrhizin low producing strain	13.913
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.967
SRR2868004	Drought Stress (root)	14.308
SRR2967015	Control (root)	17.978

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.100
SRR9715740	Leaf	3.674
SRR9715741	Leaf	3.135
SRR9715739	Root	16.703
SRR9715742	Root	18.175
SRR9715743	Root	16.431

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.280
SRR8749028	MeJA induced 9h	3.807
SRR8749029	MeJA induced 9h	2.115
SRR8749030	Uninduced	0.546
SRR8749031	Uninduced	0.122
SRR8749032	Uninduced	0.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.465
SRR8400027	Control - Root	39.696