Gene detail

Gene detail information of Glyur000235s00019540

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01170.1	1.00E-170	bidirectional amino acid transporter 1
NR	XP_004497029.1	0	PREDICTED: amino-acid permease BAT1 homolog isoform X1 [Cicer arietinum]
COG	YP_005537245.1	4.00E-114	amino acid transporter [Amycolatopsis mediterranei S699]
Swissprot	tr\|B9EXZ6\|BAT1_ORYSJ	0	Amino-acid permease BAT1 homolog
trEMBL	tr\|A0A072W1K2\|A0A072W1K2_MEDTR	0	Amino-acid permease BAT1-like protein {ECO:0000313\|EMBL:KEH44170.1}

Sequence

Transcript Sequence

>Glyur000235s00019540.1
ATGACACTCTCATCTCATGTGGATGTGGTTACAAATGGTGATGATTCTTCGCTTGACTCAGGGCATGCCCGTCTTGTTCAACTTGGTTACAAACAAGAGCTCAAGCGTGATCTTTCGGTCGCTTCAAATTTCGCACTTTCGTTTTCTATCATATCAGTGCTCACCGGAGTCACNACCCTTTACAACAATGGGTTGAAATATGGTGGCCCTGTTTCCATGCAATATGGGTGGTTTGTGGCTTCTGCTTTCACTATGTCTGTTGCACTCTCAATGGCTGAAATCTGTTCATCTTATCCAACTTCTGGTGGTCTTTACTATTGGAGCGCCAAGCTTGCTGGCCCGGAATGGGCACCCTTTGCCTCTTGGATTACTGGCTGGTTCAATATTATTGGCCAGTGGGCAGGGACAACAAGTGTAGATTTTTCACTAGCACAACTCATTCAGGTTATCATTCTCCTCAGTACTGGTGGTAAAAATGGTGGTGGATATGAAGCATCTAAATATGTTGTTATTGCTTTCCATGGTGGAATTTTGCTCCTTCACGGTATAATTAACAGCTTTCCTATCTCTGTCTTATCATTCTTGGGACAATTAGGTGCTATCTGGAATGTTTTAGGTGTTCTTGTGCTTATGATTCTCATTCCATCTGTTGCAACGGAAAGGGCTAGTGCCAAGTTTGTTTTCACTCATTTCAATGCTGACAATGGGGAAGGAATCAACAGTAGACCCTACATATTTCTCTTGGGACTTCTAATGAGTCAGTATACCCTTACTGGGTATGATGCATCAGCTCATATGACAGAGGAAACGAAGGGTGCTGATAGAAATGGGCCAAAAGGAATTATCAGTGCTGTTGGGATATCTGTTATTGTTGGATGGGGTTACATACTAGGCATTACCTTTGCTGTCACTGACATCCCTTACCTTTTGAGTGAAAGTAATGATGCTGGTGGGATGGCTTATGCTTTCTCAAGAGATGGAGCCATGCCATTGTCCTCATTGTGGCATAAAGTTAACAAACAGGAGGTCCCCATCTATGCAGTTTGGCTTTCCGTTTCTATATCATTTTGCATGGCACTGACGTCTCTTGGAAGCATAGTGGCATTTGANGCCATGGTGTCCATATCAACGATTGACCTCTATATTGCTTATGCACTACCTATCTTCTTTAGGGTGACATTGGCAAGAAAGCATTTTGTCCCTGGGCCTTTCAATTTGGGCCGGTTCGGAGTCGTTGTTGGTTGGGTTGCAGTTCTTTGGGTGGTGACCATCTCCATACTCTTCTCATTGCCTGTTTCCTACCCAATTACCATTGAGACACTCAACTACACCCCTGTTGCACTTGGCTCTGAATCTGGTACTAGTGCTGAGCCTACAATTCTGCCAACGTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00235	12530	19466	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000235s00019540.1	PF13520.1	AA_permease_2	38	305	1.10E-30
Glyur000235s00019540.1	PF13520.1	AA_permease_2	316	447	1.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.319
SRR1783600	control	0.303
SRR1783602	moderate drought stress	1.162
SRR1811619	moderate drought stress	1.225

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.246
DRR006520	Root Summer glycyrrhizin high producing strain	0.230
DRR006521	Root Winter glycyrrhizin high producing strain	0.271
DRR006522	Root Winter glycyrrhizin high producing strain	0.380
DRR006523	Root Summer glycyrrhizin low producing strain	0.828
DRR006524	Root Summer glycyrrhizin low producing strain	0.738
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.033
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.934
SRR2868004	Drought Stress (root)	1.612
SRR2967015	Control (root)	1.349

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.702
SRR9715740	Leaf	0.352
SRR9715741	Leaf	0.565
SRR9715739	Root	0.475
SRR9715742	Root	0.848
SRR9715743	Root	1.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.982
SRR8749028	MeJA induced 9h	2.540
SRR8749029	MeJA induced 9h	0.853
SRR8749030	Uninduced	6.069
SRR8749031	Uninduced	0.471
SRR8749032	Uninduced	0.749

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.112
SRR8400027	Control - Root	1.711