Gene detail

Gene detail information of Glyur000235s00019539

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01170.1	0	bidirectional amino acid transporter 1
NR	XP_003536664.1	0	PREDICTED: amino-acid permease BAT1 homolog [Glycine max]
COG	YP_005537245.1	2.00E-137	amino acid transporter [Amycolatopsis mediterranei S699]
Swissprot	tr\|B9EXZ6\|BAT1_ORYSJ	0	Amino-acid permease BAT1 homolog
trEMBL	tr\|I1LES0\|I1LES0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G41560.1}

Sequence

Transcript Sequence

>Glyur000235s00019539.1
ACATGGAGTAGTGTAGGAAGAGACAAGCTGTTAATGTTGACGAAAACGTTTCATCATTCCCAATCTCTCTGGTAATATCCAAATCCCATTCTTCCTTCCTCCGGCTTCAATCGATCACAGGGATTCGTTCTCNTTGGTTAAACCAAAAAGACGAGTCCCTTTTTGGCTTTGATTGATCCATTCTCCCTGTTACTTAACTGTCCCTACTCTGCCACCAAAATCAATATCATGGGCTCTGCCGNCACACAAACAAATGGCCATGCTCCACTTGATTCTGGGCATGCCCGTCTTCACGAACTCGGTTACAAACAAGAGCTCAAGCGTGACCTCTCGGTCATTTCAAATTTCGCCTTTTCGTTTTCTATTATATCAGTGCTGACTGGTGTCACCACCCTTTACAACACAGGGTTGACCTATGGTGGCCCTGTGTCCTTAGTATATGGGTGGTTCATGGCTTCTGCTTTCACCATGCTTGTTGCACTCTCAATGGCTGAAATCTGTTCTTCTTATCCAACTTCTGGTGGCCTTTACTATTGGAGCGCCAAGCTTGCTGGCCCTGGTTGGGCACCCTTTGCCTCTTGGATCACTGGCTGGTTCAATATTGTTGGCCAGTGGGCAGTGACAACAAGTGTAGATTTTTCACTTGCACAACTCATTCAGGTTATCATTCTCCTTAGTACTGGTGGAAAAAATGGTGGTGGATATGAAGCATCTAAATATGTAATTATTGCTTACCATGGGGGAATTTTGCTCCTACACGGTATAATAAACAGCCTTCCAATCTCATTGTTATCATTCTTAGGGCAGTTGGCTGCTATCTGGAATGTTTTAGGTGTTTTTGTGCTTATGATTCTCATTCCATCTGTTGCAACGGAAAGGGCTAGTGCCAAGTTTGTTTTCACTCATTTCAATGCTGACAATGGGGAAGGAATCAACAGTAAACCCTACATATTTCTCTTGGGACTTCTAATGAGTCAGTATACCCTTACTGGGTATGATGCATCAGCTCATATGACAGAGGAAACAAGGGATGCTGATAGAAATGGACCAAAAGGAATTATNAGCGCTGTTGGGATATCTGTTATTGTTGGATGGGGTTACATACTAGGCATTACCTTTGCTGTCACTGACATCCCATACCTTTTGGATNAAAATAATGATGCTGGTGGATACGCCATTGCCGAAATATTTTATCTTGCATTTAAAAAAAGATATGGGCATGGAATTGGGGGTATTATTTGCTTGGCAATTGTTGCTATTGCTATATTTTTCTGTGGTATGAGTTCAGTTACCAGCAATTCAAGGATGGCTTATGCTTTCTCAAGAGATGGGGCCATGCCACTGTCCTCATTGTGGCATAAAGTTAACAAGCAGGAGGTTCCCATATATGCAGTTTGGCTTTCCGTATTTATATCATTTTGCATGGCCCTAACGTCTCTTGGAAGCATAGTGGCATTTGAGGCCATGGTATCCATAGCAACGATTGGCCTCTATATTGCATATGCACTACCTATATTCTTTAGGGTGACATTGGCAAGAAAGCATTTTGTCCCTGGGCCTTTCAACTTGGGCCGGTTCGGAGTCGTTGTTGGTTGGGTNGCAGTTCTTTGGGTGGTGACCATATCCATACTCTTCTCATTACCTGTTTCCTACCCAATTACCATTGAGACACTTAACTACACCCCTGTTGCTGTTGGGTGTTTGCTTATTCTTGTAGTTTCTTATTGGCTAATCAGTGGTCGGCGTTGGTTTAAAGGCCCTATAACCAATATACAAAAGTGAACTTGGGTACATAATTAGTCAATTGAACTCGTGTTGAATATGNCATTTTTTTTAACCACTGTTTGGAATTTATTTTGCTATCAGTGTATAATTTATTTTTGTCTAAATCCTTGGTGTTAACTTTANCCCGAGATCTCGTTTAAGAGAAATNAAAATCCTCACAATGTGTACCAGTAATGTGTAATATTCATGTCATAATGTGTGTAAATATGGTGAAGNACAGGGTTTGGGCTCAGCTTGTGAAAGAGATTTCACTATTTTAGTTTTTCCATCTTCCTTAATTTTAAGATTGGACCCAGCTGGAGCTCCCAACTCGGCTGGACGCGTTTAAAACCTGCATATTCTTTGACCCAAAAAAAANANCTGCACATTGTTTTGACCCAAAAAACACCTGCATATTGTTGACCAAAAAAAACCCTGCATATTGTATCCGCTGAGCTTAGTTTTGATTCGTTATGATTTTGCGAATCTGCATGTTAACTCCGAGTCAGATTTTATATGGATCTTGAGATTCTTGACATCATCTTAGAGCATCTCCAGCGGCGTTTCTTATTGCGTTCCTTAGCAGTTTAGCAACGTTGCTTAACTGATTTCACCATTGAAGCAGATGAGCTGGCGTCCCTTGTACAAGATGCGTTGCTTGTATAAGCAACTTTGCTCTTTGCATAAGAAACGTTGCTTAACAATAAAAAAAAGCAAAAAATACACCAACCAAAAGCAACAGAAGGGGAGGGAAAATAACTGAATAAATCCATGATCAAAACAGATCCAGAATAAGATTAAAGCCAAATACAGAAAATAGAAAAAATTACAAAATATCACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00235	3	5091	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0003333 amino acid transmembrane transport

GO:0006865 amino acid transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000235s00019539.1	PF13520.1	AA_permease_2	34	491	3.00E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.575
SRR1783600	control	0.602
SRR1783602	moderate drought stress	0.758
SRR1811619	moderate drought stress	0.757

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.486
DRR006520	Root Summer glycyrrhizin high producing strain	1.305
DRR006521	Root Winter glycyrrhizin high producing strain	1.547
DRR006522	Root Winter glycyrrhizin high producing strain	1.498
DRR006523	Root Summer glycyrrhizin low producing strain	2.988
DRR006524	Root Summer glycyrrhizin low producing strain	3.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.657

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.100
SRR2868004	Drought Stress (root)	14.102
SRR2967015	Control (root)	13.762

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.251
SRR9715740	Leaf	5.247
SRR9715741	Leaf	9.699
SRR9715739	Root	1.929
SRR9715742	Root	2.476
SRR9715743	Root	1.721

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.218
SRR8749028	MeJA induced 9h	12.448
SRR8749029	MeJA induced 9h	9.784
SRR8749030	Uninduced	10.288
SRR8749031	Uninduced	5.752
SRR8749032	Uninduced	8.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.502
SRR8400027	Control - Root	3.853