Gene detail information of Glyur000234s00015100 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28360.1 | 6.00E-39 | Ribosomal protein L22p/L17e family protein |
| NR | XP_007139929.1 | 2.46E-57 | hypothetical protein PHAVU_008G070600g [Phaseolus vulgaris] |
| COG | YP_576832.1 | 5.00E-10 | 50S ribosomal protein L22 [Nitrobacter hamburgensis X14] |
| trEMBL | tr|V7B4X7|V7B4X7_PHAVU | 9.00E-58 | Uncharacterized protein {ECO:0000313|EMBL:ESW11923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00234 | 231708 | 232891 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000234s00015100.1 | PF00237.14 | Ribosomal_L22 | 31 | 95 | 5.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.356 |
| SRR1783600 | control | 1.822 |
| SRR1783602 | moderate drought stress | 1.243 |
| SRR1811619 | moderate drought stress | 1.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.887 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.460 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.460 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.714 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.732 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.629 |
| SRR2868004 | Drought Stress (root) | 0.162 |
| SRR2967015 | Control (root) | 1.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.179 |
| SRR9715741 | Leaf | 0.024 |
| SRR9715739 | Root | 0.080 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.193 |
| SRR8400027 | Control - Root | 0.136 |