Gene detail

Gene detail information of Glyur000234s00015087

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02040.1	5.00E-141	peptide transporter 2
NR	XP_003524837.1	0	PREDICTED: peptide transporter PTR2-like [Glycine max]
COG	NP_870446.1	3.00E-32	oligopeptide transporter, kidney isoform [Rhodopirellula baltica SH 1]
Swissprot	tr\|P46032\|PTR2_ARATH	3.00E-177	Protein NRT1/ PTR FAMILY 8.3
trEMBL	tr\|I1K3A6\|I1K3A6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G26670.1}

Sequence

Transcript Sequence

>Glyur000234s00015087.1
CCCATCGGAAATGGGGTTTGCTTCGTTGCCCAGCTAACCTTCCTAGTTCCTAGACCCGATACCTTTTTCTATTCCAATATTCCAGCAACTTGCATAATCATCTTCCTCTCTGACACAAACGCACATCCATGAATTTCAATTGATTATACAAGGATAAAGAAAAAAAAACAATTGCGGTTGTTTGCTTTGAGCATTCCGAGGATTTTATTTTTATTTTATTATCCATAAATTGCAACATCTCTTGCTCGCTCAATTTCGAAGGAGACATAGAGAGGCTTCTGAAGAGATAGAGAGAGATGGGTTCCATAGAGAATGATGCGTTGCTTGCGGAAGAGGCTCTTCTTCAGGACGAAGAGACTCAAGAGAGTAGAGAATACACAGGAGATGGCTCAGTTGACTTTAAAGGGAGACCTGTTCTTAAGCAGAATACTGGCACTTGGAAGGCTTGCCCATTTATCCTAGGCAATGAGTGCTGCGAACGTTTGGCATACTATGGCATTGCAACAAATCTTGTTACCTATCTTACTCAAAAACTACATGAAGGAAATGTCTCTGCAGCAAGAAATGTCACCACTTGGCAAGGCACCTGTTATCTTGCACCTCTCATTGGAGCGGTTCTAGCAGATTCTTACTGGGGACGATACTGGACAATTGCTGTTTTCTCCACGATTTATTTCCTTGGGATGTGTACATTGACTCTATCTGCATCTGTTCCAGCATTGAAGCCTGCCGAGTGTTTGGGTCCCATATGCCCTCCAGCTACTCCTGCACAATATGCTGTGTTCTTCTTTGGTCTCTACCTGATTGCACTTGGGACTGGTGGTATTAAACCATGTGTCTCATCTTTTGGGGCAGATCAGTTTGATGATACTGATCCCCGGGAAAGGATTAAGAAGGGATCCTTTTTCAACTGGTTTTACTTCTCTATCAACATAGGTGCCCTTGTATCAAGCAGTTTTATTGTGTGGATTCAAGAAAATGCAGGCTGGGGTCTTGGATTTGGCATTCCTGCTTTATTTATGGGATTAGCTATAGGAAGCTTCTTTATAGGCACGCCCCTTTACAGGTTTCAAAAACCAGGGGGAAGCCCTATTACAAGAATGTGCCAGGTTGTGGTAGCATCTTNTCGGAAGCGGAATCTGGTTGTCCCTGAGGATAGTAGTCTTTTGTATGAGACCCCAGACAAGAGCTCTGCAATTGAAGGAAGCCGGAAACTGGAGCATAGTGATGAACTAAGTCGTGATTGTTCTGTATGTGATATATGGATATTCTGCAATTATGTGCATTTCTTTCACTTGCAAAGGAAAGTACAGAATAATATATTTTTTGTAAAAAAATTAATGGAAATTAATGATGATAATTGCCCGTATAAATCAGGTAATAAATTGTTTTTTCGACAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00234	144358	187698	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006857 oligopeptide transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000234s00015087.1	PF00854.16	PTR2	116	311	5.80E-65
Glyur000234s00015087.2	PF00854.16	PTR2	113	308	5.70E-65
Glyur000234s00015087.3	PF00854.16	PTR2	113	308	6.30E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.240
SRR1783600	control	6.230
SRR1783602	moderate drought stress	5.255
SRR1811619	moderate drought stress	5.117

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.771
DRR006520	Root Summer glycyrrhizin high producing strain	6.639
DRR006521	Root Winter glycyrrhizin high producing strain	4.548
DRR006522	Root Winter glycyrrhizin high producing strain	4.462
DRR006523	Root Summer glycyrrhizin low producing strain	5.817
DRR006524	Root Summer glycyrrhizin low producing strain	5.964
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.759

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.560
SRR2868004	Drought Stress (root)	22.241
SRR2967015	Control (root)	19.440

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.806
SRR9715740	Leaf	8.541
SRR9715741	Leaf	8.619
SRR9715739	Root	6.748
SRR9715742	Root	7.914
SRR9715743	Root	7.275

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.185
SRR8749028	MeJA induced 9h	4.161
SRR8749029	MeJA induced 9h	1.471
SRR8749030	Uninduced	2.004
SRR8749031	Uninduced	2.342
SRR8749032	Uninduced	1.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.106
SRR8400027	Control - Root	10.436