Gene detail information of Glyur000234s00015086 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36740.1 | 6.00E-94 | sequence-specific DNA binding transcription factors;DNA binding;DNA binding |
| NR | XP_004504620.1 | 0 | PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Cicer arietinum] |
| Swissprot | tr|F4IP06|SWC2_ARATH | 1.00E-140 | SWR1 complex subunit 2 |
| trEMBL | tr|I1K3A4|I1K3A4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G26640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00234 | 136925 | 141701 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000234s00015086.1 | PF05764.8 | YL1 | 16 | 241 | 1.50E-47 |
| Glyur000234s00015086.1 | PF08265.6 | YL1_C | 271 | 299 | 4.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.071 |
| SRR1783600 | control | 10.044 |
| SRR1783602 | moderate drought stress | 16.444 |
| SRR1811619 | moderate drought stress | 16.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.853 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.724 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.304 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.958 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.467 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.315 |
| SRR2868004 | Drought Stress (root) | 21.961 |
| SRR2967015 | Control (root) | 20.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.390 |
| SRR9715740 | Leaf | 10.624 |
| SRR9715741 | Leaf | 11.884 |
| SRR9715739 | Root | 0.677 |
| SRR9715742 | Root | 6.386 |
| SRR9715743 | Root | 4.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.046 |
| SRR8749028 | MeJA induced 9h | 15.556 |
| SRR8749029 | MeJA induced 9h | 14.696 |
| SRR8749030 | Uninduced | 14.373 |
| SRR8749031 | Uninduced | 13.778 |
| SRR8749032 | Uninduced | 8.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.529 |
| SRR8400027 | Control - Root | 16.441 |